Information on SUBCLASS 4.5.1 |
Subclass Accession number: 7894
Subclass: 4.5.1 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 11 Average sequence ID (%) : 25.3 +/- 26.0 Average RMSD (Å) : 0.345 +/- 0.230 Consensus geometry
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Consensus Sequence: | XhGXXXXX |
(φψ)-conformation: | bbeaalpb |
Pattern: | x | [dgtv] | [fgilvy] | [G] | [ikl] | [eflm] | [gkq] | [afiklv] | [CDGNSTV] | x |
Conservation: | -1.000 | -0.575 | -0.503 | 2.427 | 0.058 | -0.287 | -0.257 | -0.475 | -0.388 | -1.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
153l_*_90 | 153l | - | 90 | 97 | .GFGLMQVD. | .EETTTTEE. | .xbeaalxx. |
1b7b_A_193 | 1b7b | A | 194 | 202 | PVVGQELKG. | EEETTTTEE. | wbbeaavxx. |
1chk_A_44 | 1chk | A | 44 | 52 | YTGGIIGFC. | EEETTTTEE. | xbbeaavxb. |
1f6w_A_16 | 1f6w | A | 18 | 27 | KKLGLLGDSV | EE-SSSS-EE | bpbeaagxbb |
1gd6_A_48 | 1gd6 | A | 48 | 56 | KDYGLFQIN. | EEETTTTEE. | bbbeaalxx. |
1gu6_A_217 | 1gu6 | A | 217 | 226 | YFDGKNKAVK | EEETTTTEEE | bxbeaalxxb |
1lmq_*_51 | 1lmq | - | 51 | 59 | TDYGIFQIN. | EEETTTTEE. | bbbeaalxx. |
1qgi_A_60 | 1qgi | A | 60 | 67 | .TIGLFGAT. | .EETTTTEE. | .xbeaavxb. |
1qqy_A_53 | 1qqy | A | 53 | 60 | .DYGIFQLN. | .EETTTTEE. | .bbeaalxx. |
2eql_*_52 | 2eql | - | 52 | 60 | SDYGLFQLN. | EEETTTTEE. | bxbeaalxx. |
3lzt_*_51 | 3lzt | - | 51 | 59 | TDYGILQIN. | EEETTTTEE. | bbbeaalxx. |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gu6_A_217 | 1gu6 | A | CACALCIUM ION | Y - 217 |
1gu6_A_217 | 1gu6 | A | CACALCIUM ION | F - 218 |
1gu6_A_217 | 1gu6 | A | HECHEME C | F - 218 |
1gu6_A_217 | 1gu6 | A | CACALCIUM ION | V - 225 |
1gu6_A_217 | 1gu6 | A | HECHEME C | V - 225 |
1lmq_*_51 | 1lmq | * | NAGN-ACETYL-D-GLUCOSAMINE | D - 52 |
1lmq_*_51 | 1lmq | * | NAGN-ACETYL-D-GLUCOSAMINE | F - 56 |
1lmq_*_51 | 1lmq | * | NAGN-ACETYL-D-GLUCOSAMINE | Q - 57 |
1lmq_*_51 | 1lmq | * | NAGN-ACETYL-D-GLUCOSAMINE | I - 58 |
1lmq_*_51 | 1lmq | * | NAGN-ACETYL-D-GLUCOSAMINE | N - 59 |
1qgi_A_60 | 1qgi | A | GCSD-GLUCOSAMINE | T - 60 |
1qgi_A_60 | 1qgi | A | NAGN-ACETYL-D-GLUCOSAMINE | T - 60 |
1qgi_A_60 | 1qgi | A | GCSD-GLUCOSAMINE | F - 64 |
1qgi_A_60 | 1qgi | A | GCSD-GLUCOSAMINE | G - 65 |
1qgi_A_60 | 1qgi | A | GCSD-GLUCOSAMINE | A - 66 |
1qgi_A_60 | 1qgi | A | GCSD-GLUCOSAMINE | T - 67 |
3lzt_*_51 | 3lzt | * | ACTACETATE ION | D - 52 |
3lzt_*_51 | 3lzt | * | ACTACETATE ION | L - 56 |
3lzt_*_51 | 3lzt | * | ACTACETATE ION | Q - 57 |
3lzt_*_51 | 3lzt | * | ACTACETATE ION | I - 58 |
3lzt_*_51 | 3lzt | * | ACTACETATE ION | N - 59 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gu6_A_217 | 1gu6 | A | HA1HEC BINDING SITE FOR CHAIN A | F - 218 |
Clusters included in this Subclass |
CLUSTER: HA.5.27 |