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PDB code:

Information on SUBCLASS 5.1.1

Subclass Accession number: 7919 Subclass: 5.1.1 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 53 Average sequence ID (%) : 15.3 +/- 15.7 Average RMSD (Å) : 0.738 +/- 0.229 Consensus geometry d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aut_C_30	1aut	C	32	43	VLLDSKKKLACG	EEE-TTS-EEEE	bxxxaavbxabb
1bru_P_198	1bru	P	200	211	NCQGANGQWQVH	EEE-TTS-EEEE	xbxxaagxxbxa
1bu6_O_15	1bu6	O	19	30	VVMDHDANIISV	EEE-TTS-EEEE	bbbxaavbxabb
1cqq_A_52	1cqq	A	61	72	DLYNKNGIKLEI	EEE-TTS-EEEE	xxbxaavxxavb
1cv8_*_119	1cv8	-	127	138	NAKLNNGQEVII	EEEETTS-EEEE	bbbxaavxbbbx
1dd9_A_203	1dd9	A	207	218	PIRDKRGRVIGF	EEE-TTS-EEEE	xxbxaavxxabb
1dix_A_158	1dix	A	161	172	CNVDQSGNSQLY	EEE-TTS-EEEE	bbbxaavxxbxa
1dym_A_266	1dym	A	272	283	FLANRRGKLEKI	EEE-TTS-EEEE	bxbxaavbpabb
1e39_A_276	1e39	A	281	292	VLKDDKGTVKGI	EEE-TTS-EEEE	xxbxaavbxaeb
1eax_A_198	1eax	A	200	211	SSVEADGRIFQA	EEE-TTS-EEEE	bbxxaavxxbxa
1eg7_A_1258	1eg7	A	1259	1270	LVQTLENTPAFI	EEEETT--EEEE	xbbxaavxwbbb
1evl_A_465	1evl	A	469	480	TLYDCLDRAWQC	EEE-TT--EEEE	xbbxaavxxbxa
1f1s_A_223	1f1s	A	228	239	KISDKSGKIIKE	EEE-TT--EEEE	xbbbaavxxabb
1foh_A_82	1foh	A	86	97	YNPDENGHIRRT	EEE-TT--EEEE	bbxxaavxxbxa
1g2l_A_30	1g2l	A	32	43	LLINEENEGFCG	EEE-TTS-EEEE	bxbxaavbxabb
1gg6_B_30	1gg6	B	32	43	SLQDKTGFHFCG	EEE-TT--EEEE	bxbxaavxxabb
1h16_A_543	1h16	A	546	557	PIRDEDGLAIDF	EEE-TTS-EEEE	xbbxaavxxabb
1h2w_A_435	1h2w	A	441	452	FYPSKDGTKIPM	EEE-TTS-EEEE	bbxxaavxxbwb
1h6l_A_182	1h6l	A	188	199	LNADKNGYISGK	EEE-TTSSEEEE	xbxxaavbbbbb
1iic_A_311	1iic	A	315	326	VVEQPDGKITDF	EEE-TTS-EEEE	bbbxaavxxabb
1itk_A_331	1itk	A	333	344	PEKGPGGAWQWA	EEE-TTS-EEEE	xbxxaavbxbbb
1itw_A_433	1itw	A	436	447	RVTDESGKLLLE	EEEETT--EEEE	bbbxaavxxabb
1iyk_A_316	1iyk	A	320	331	VVEDENGIITDY	EEE-TTS-EEEE	bbbxaavxxabb
1j9j_A_182	1j9j	A	189	200	ERVSPFGEKYYW	EEE-TTS-EEEE	xbbxaavxxbbb
1jof_A_120	1jof	A	124	135	FSVSETGKLEKN	EEE-TT--EEEE	bxbxaavxpabx
1jof_A_168	1jof	A	172	183	HRKLASGEVELV	EEE-TTS-EEEE	bbxxaagxbbxa
1jof_A_283	1jof	A	287	298	FKLRDCGSIEKQ	EEE-TTS-EEEE	bbbxaagxxabx
1jq5_A_129	1jq5	A	131	142	VIYSDDGVFESY	EEE-TTS-EEEE	bxbxaavbpabb
1ju3_A_459	1ju3	A	465	476	VDVFPDGRAIAL	EEE-TTS-EEEE	bbxxaagpbxxa
1ju3_A_6	1ju3	A	13	24	MVPMRDGVRLAV	EEE-TTS-EEEE	xbxxaavxbbxb
1kcf_A_52	1kcf	A	57	68	ASQNEDSKVIIH	EEE-TTS-EEEE	bbxxaavxxbxa
1l1n_A_52	1l1n	A	61	72	ALEDQAGTNLEI	EEE-TTS-EEEE	xxbxaavxxavb
1mo9_A_277	1mo9	A	281	292	IEEDANGRVQAV	EEE-TTSBEEEE	bxbxaavbpabb
1mpy_A_175	1mpy	A	179	190	QVLDENGTRVAQ	EEE-TT--EEEE	bbbxaavxxabb
1n8j_A_119	1n8j	A	122	133	FVVDPQGIIQAI	EEE-TTSBEEEE	bxbxaavxxabb
1nek_A_164	1nek	A	169	180	LVKNQDGAVVGC	EEE-TTS-EEEE	xbxxaavbxbeb
1nek_A_367	1nek	A	369	380	LTVNEKGEDVVV	EEE-SSS-EEEE	bbxxaagxxbxb
1nj1_A_217	1nj1	A	222	233	DTLMPDGKTLQI	EEE-TTS-EEEE	bbbxaavxxbxa
1nui_A_104	1nui	A	110	121	DYRDQNGNIVSQ	EEE-TTS-EEEE	xxxxaalxxabb
1ocv_A_98	1ocv	A	101	112	FRFNGAGKVVSM	EEE-TTS-EEEE	bbbxaavxxabb
1od2_A_1537	1od2	A	1542	1553	LIEDENGELTEV	EEE-SSS-EEEE	bbxxaavxxbxb
1onw_A_356	1onw	A	357	368	LVMTPELRIEQV	EEE-TT--EEEE	bbbxaavbxabb
1os8_A_198	1os8	A	200	211	FRKDNADEWIQV	EEE-TTS-EEEE	bbxxaalbxbxa
1oyg_A_311	1oyg	A	316	327	IELNDDYTLKKV	EEE-TTSSEEEE	bxbxaavxxabx
1p1j_A_25	1p1j	A	37	48	VTKTASGRFDVT	EEE-TTS-EEEE	bbbxaavbxxbb
1pq7_A_198	1pq7	A	198	209	PIVDSSNTLIGA	EEE-TT--EEEE	xbbxaavxxabb
1psq_A_128	1psq	A	130	141	FVLDTDNTIRYV	EEE-TT-BEEEE	bbxxaavxxabb
1qo8_A_271	1qo8	A	276	287	LVVNDDHSVVGA	EEE-TTSBEEEE	xbbxaalbxaeb
1qq2_A_128	1qq2	A	131	142	FIIDDKGILRQI	EEE-TTSBEEEE	bxbxaavxxabb
1sox_A_237	1sox	A	243	254	LDADPGGAPYGA	EEE-TT--EEEE	axbxaagxwxbb
1svp_A_115	1svp	A	117	128	DVKNEDGDVIGH	EEE-TTS-EEEE	xbbxaavxxaeb
2ovw_A_266	2ovw	A	272	283	FVANKQGDLIEL	EEE-TTS-EEEE	bxbxaavxxabb
3rp2_A_30	3rp2	A	34	45	DIVTEKGLRVIC	EEE-TTS-EEEE	bbxxaavbxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1aut_C_30	1aut	C	MAIDEOXO-METHYLARGININE	A - 41
1aut_C_30	1aut	C	MAIDEOXO-METHYLARGININE	C - 42
1cqq_A_52	1cqq	A	AG74-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE -3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER	K - 69
1cqq_A_52	1cqq	A	AG74-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE -3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO-PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER	E - 71
1cv8_*_119	1cv8	*	E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE	G - 119
1cv8_*_119	1cv8	*	E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE	H - 120
1cv8_*_119	1cv8	*	E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE	A - 121
1e39_A_276	1e39	A	FADFLAVIN-ADENINE DINUCLEOTIDE	T - 276
1e39_A_276	1e39	A	FADFLAVIN-ADENINE DINUCLEOTIDE	R - 277
1e39_A_276	1e39	A	FADFLAVIN-ADENINE DINUCLEOTIDE	G - 278
1e39_A_276	1e39	A	FADFLAVIN-ADENINE DINUCLEOTIDE	I - 279
1eax_A_198	1eax	A	BENBENZAMIDINE	V - 213
1evl_A_465	1evl	A	TSB5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE	K - 465
1evl_A_465	1evl	A	TSB5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE	Q - 479
1evl_A_465	1evl	A	TSB5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE	C - 480
1evl_A_465	1evl	A	TSB5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE	G - 481
1evl_A_465	1evl	A	TSB5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE	T - 482
1evl_A_465	1evl	A	ZNZINC ION	Q - 484
1evl_A_465	1evl	A	TSB5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE	Q - 484
1gg6_B_30	1gg6	B	APLN-(1-BENZYL-3,3,3-TRIFLUORO-2,2-DIHYDROXY-PROPYL)-ACETAMIDE	Q - 34
1gg6_B_30	1gg6	B	APLN-(1-BENZYL-3,3,3-TRIFLUORO-2,2-DIHYDROXY-PROPYL)-ACETAMIDE	T - 37
1gg6_B_30	1gg6	B	APLN-(1-BENZYL-3,3,3-TRIFLUORO-2,2-DIHYDROXY-PROPYL)-ACETAMIDE	G - 38
1gg6_B_30	1gg6	B	APLN-(1-BENZYL-3,3,3-TRIFLUORO-2,2-DIHYDROXY-PROPYL)-ACETAMIDE	F - 39
1gg6_B_30	1gg6	B	APF1,1,1-TRIFLUORO-3-ACETAMIDO-4-PHENYL BUTAN-2-ONE(N-ACETYL-L-PHENYLALANYL TRIFLUOROMETHYL KETONE)	F - 41
1gg6_B_30	1gg6	B	APF1,1,1-TRIFLUORO-3-ACETAMIDO-4-PHENYL BUTAN-2-ONE(N-ACETYL-L-PHENYLALANYL TRIFLUOROMETHYL KETONE)	C - 42
1jof_A_120	1jof	A	MSESELENOMETHIONINE	Y - 139
1jof_A_168	1jof	A	MSESELENOMETHIONINE	L - 169
1jof_A_168	1jof	A	MSESELENOMETHIONINE	T - 171
1jof_A_168	1jof	A	MSESELENOMETHIONINE	V - 183
1jof_A_168	1jof	A	MSESELENOMETHIONINE	G - 184
1jof_A_168	1jof	A	MSESELENOMETHIONINE	S - 185
1jof_A_168	1jof	A	MSESELENOMETHIONINE	V - 186
1jof_A_283	1jof	A	MSESELENOMETHIONINE	I - 284
1jof_A_283	1jof	A	MSESELENOMETHIONINE	A - 285
1jof_A_283	1jof	A	MSESELENOMETHIONINE	G - 286
1jof_A_283	1jof	A	MSESELENOMETHIONINE	F - 287
1jof_A_283	1jof	A	MSESELENOMETHIONINE	K - 288
1jof_A_283	1jof	A	MSESELENOMETHIONINE	L - 289
1jof_A_283	1jof	A	MSESELENOMETHIONINE	I - 295
1jq5_A_129	1jq5	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	L - 129
1jq5_A_129	1jq5	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	S - 130
1jq5_A_129	1jq5	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 131
1jq5_A_129	1jq5	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	Y - 133
1mpy_A_175	1mpy	A	ACNACETONE	F - 191
1nek_A_164	1nek	A	FADFLAVIN-ADENINE DINUCLEOTIDE	W - 164
1nek_A_164	1nek	A	FADFLAVIN-ADENINE DINUCLEOTIDE	Y - 165
1nek_A_164	1nek	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 166
1nek_A_164	1nek	A	FADFLAVIN-ADENINE DINUCLEOTIDE	L - 167
1nj1_A_217	1nj1	A	5CA5'-O-(N-(L-CYSTEINYL)-SULFAMOYL)ADENOSINE	Q - 232
1nj1_A_217	1nj1	A	5CA5'-O-(N-(L-CYSTEINYL)-SULFAMOYL)ADENOSINE	I - 233
1nj1_A_217	1nj1	A	5CA5'-O-(N-(L-CYSTEINYL)-SULFAMOYL)ADENOSINE	G - 234
1nj1_A_217	1nj1	A	5CA5'-O-(N-(L-CYSTEINYL)-SULFAMOYL)ADENOSINE	T - 235
1nj1_A_217	1nj1	A	5CA5'-O-(N-(L-CYSTEINYL)-SULFAMOYL)ADENOSINE	H - 237
1oyg_A_311	1oyg	A	CACALCIUM ION	G - 311
1oyg_A_311	1oyg	A	EDO1,2-ETHANEDIOL	Y - 322
1oyg_A_311	1oyg	A	EDO1,2-ETHANEDIOL	T - 323
1oyg_A_311	1oyg	A	EDO1,2-ETHANEDIOL	L - 324
1pq7_A_198	1pq7	A	ARGARGININE	V - 210
1pq7_A_198	1pq7	A	ARGARGININE	S - 211
1pq7_A_198	1pq7	A	ARGARGININE	W - 212
1qo8_A_271	1qo8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	S - 271
1qo8_A_271	1qo8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	R - 272
1qo8_A_271	1qo8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 273
1qo8_A_271	1qo8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 274
1sox_A_237	1sox	A	MTEPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7, 8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER	E - 241
1sox_A_237	1sox	A	MTEPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7, 8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER	G - 242
1sox_A_237	1sox	A	MTEPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7, 8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER	L - 243
1sox_A_237	1sox	A	MTEPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7, 8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER	D - 244
1sox_A_237	1sox	A	MTEPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7, 8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER	Y - 252
2ovw_A_266	2ovw	A	NAGN-ACETYL-D-GLUCOSAMINE	K - 276

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1cv8_*_119	1cv8	*	NULCATALYTIC TRIAD.	H - 120

Clusters included in this Subclass

CLUSTER: HA.4.14

CLUSTER: HA.4.22

CLUSTER: HA.5.23

CLUSTER: HA.6.3

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