Logo
Information on SUBCLASS 5.1.3
Subclass Accession number: 7921
Subclass: 5.1.3 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 38

Average sequence ID (%) : 15.3 +/- 16.9
Average RMSD (Å) : 0.734 +/- 0.115

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: hXpXpGpXX
(φψ)-conformation: bbpaagpbb
Pattern: x[acfgiltv]x[degnst]x[adeknqrst][dgkns][dehknpqrst]x[afgiklmtv]x[acfgikltv]
Conservation:-0.699-0.378-0.2580.629-0.3140.4842.8290.069-0.762-0.309-0.818-0.471
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a1r_A_1681a1r   A168179PLLCPTGHAVGLEEE-TTS-EEEExbxxaavxxabb
1abr_A_2121abr   A218229TLTNIRNEPVIVEEE-TTS-EEEExbbxaavbpbxb
1agj_A_1981agj   A198209GIFNSNGELVGIEEE-TTSEEEEExbbxaavxxabb
1arb_*_1971arb   -197208PIYSPEKRVLGQEEE-TTS-EEEExbbxaavbxaeb
1aut_C_301aut   C3243VLLDSKKKLACGEEE-TTS-EEEEbxxxaavbxabb
1bqb_A_21bqb   A617TGKGVLGDTKDIEEE-TTS-EEEEbbxxaavxbbxb
1bru_P_1981bru   P200211NCQGANGQWQVHEEE-TTS-EEEExbxxaagxxbxa
1dtd_A_3891dtd   A394405IGSSFENRPMNVEEE-TT--EEEEaebxaavxxxbb
1e9i_A_91e9i   A1021EIIDSRGNPTVEEEE-TTS-EEEEbbbxaavbwbxb
1eax_A_1981eax   A200211SSVEADGRIFQAEEE-TTS-EEEEbbxxaavxxbxa
1ep5_A_2291ep5   A229240PILDNQGRVVAIEEE-TTS-EEEExbbxaavxxabb
1eur_*_2211eur   -226237TIINAAGAFQAVEEE-TT--EEEEbbbxaavxxbbb
1f52_A_161f52   A2031RFTDTKGKEQHVEEE-TTS-EEEEbbbxaagxxbbb
1f89_A_1091f89   A114125IIFNEDGKLIDKEEE-TTS-EEEExbbbaagxxabb
1foh_A_821foh   A8697YNPDENGHIRRTEEE-TT--EEEEbbxxaavxxbxa
1gg6_B_301gg6   B3243SLQDKTGFHFCGEEE-TT--EEEEbxbxaavxxabb
1h5r_A_1471h5r   A149160VEFDKNGTAISLEEE-TTS-EEEEbbbxaavxxabb
1i1n_A_1891i1n   A194205YDKLQDGSIKMKEEE-TTS-EEEEbbbxaavxbbbb
1i7d_A_2201i7d   A227238HIVTPADERFTAEEE-TT--EEEExxbxaavxbbbb
1jq5_A_1291jq5   A131142VIYSDDGVFESYEEE-TTS-EEEEbxbxaavbpabb
1jqp_A_491jqp   A4960TAYDEVGNSGYFEEE-SSS-EEEExbbxaavxbbbb
1kei_A_41kei   A920VGRGVLGDQKNIEEE-TTS-EEEEbbbxaavxxbxb
1kop_A_1081kop   A113124VHLDENKQPLVLEEE-TT--EEEExbbxaavxwbbb
1ky9_A_2131ky9   A213224ALVNLNGELIGIEEE-TTS-EEEExbbxaavxxaeb
1lml_*_2261lml   -230241CQTFSDGHPAVGEEE-TTS-EEEEabbxaavxwabb
1m4l_A_331m4l   A3849IGRSYEGRPIYVEEE-TTS-EEEEaebxaavxxbbb
1nek_A_3671nek   A369380LTVNEKGEDVVVEEE-SSS-EEEEbbxxaagxxbxb
1nn6_A_301nn6   A3445EIVTSNGPSKFCEEE-TTS-EEEEbbxxaaGpbbbb
1od2_A_15371od2   A15421553LIEDENGELTEVEEE-SSS-EEEEbbxxaavxxbxb
1od4_A_15371od4   A15421553LIEDENGELTEVEEE-TTS-EEEEbbxxaavxxbxb
1pq7_A_1981pq7   A198209PIVDSSNTLIGAEEE-TT--EEEExbbxaavxxabb
1prx_A_1331prx   A135146FVFGPDKKLKLSEEE-TTSBEEEEbbbxaavxxabb
1qau_A_1041qau   A109120TTFTGDGTPKTIEEE-TT--EEEEbbbxaavxwbxb
1qtf_A_1891qtf   A189200GIFNLKGELIGIEEE-TT--EEEExbbbaavxxaeb
1rlv_A_1181rlv   A120131AVVDEESEITYFEEE-TTS-EEEExxbxaavxbbxb
1svp_A_2181svp   A218229PIMDNSGRVVAIEEE-TTS-EEEExbbbaavxxabb
1vcp_A_2221vcp   A222233PIFDNKGRVVAIEEE-TTS-EEEExbxbaavxxabb
3rp2_A_303rp2   A3445DIVTEKGLRVICEEE-TTS-EEEEbbxxaavbxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a1r_A_1681a1r   A     ZNZINC ION C - 171
1a1r_A_1681a1r   A     ZNZINC ION P - 172
1a1r_A_1681a1r   A     ZNZINC ION T - 173
1a1r_A_1681a1r   A     ZNZINC ION G - 174
1a1r_A_1681a1r   A     ZNZINC ION H - 175
1a1r_A_1681a1r   A     ZNZINC ION V - 177
1abr_A_2121abr   A     NAGN-ACETYL-D-GLUCOSAMINE T - 212
1abr_A_2121abr   A     NAGN-ACETYL-D-GLUCOSAMINE F - 213
1abr_A_2121abr   A     NAGN-ACETYL-D-GLUCOSAMINE P - 214
1abr_A_2121abr   A     NAGN-ACETYL-D-GLUCOSAMINE N - 215
1abr_A_2121abr   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 216
1abr_A_2121abr   A     NAGN-ACETYL-D-GLUCOSAMINE I - 228
1abr_A_2121abr   A     NAGN-ACETYL-D-GLUCOSAMINE D - 230
1aut_C_301aut   C     MAIDEOXO-METHYLARGININE A - 41
1aut_C_301aut   C     MAIDEOXO-METHYLARGININE C - 42
1eax_A_1981eax   A     BENBENZAMIDINE V - 213
1ep5_A_2291ep5   A     UREUREA R - 236
1f52_A_161f52   A     MPD2-METHYL-2,4-PENTANEDIOL F - 16
1f52_A_161f52   A     MPD2-METHYL-2,4-PENTANEDIOL D - 18
1f52_A_161f52   A     MPD2-METHYL-2,4-PENTANEDIOL R - 20
1f52_A_161f52   A     MPD2-METHYL-2,4-PENTANEDIOL F - 21
1f52_A_161f52   A     MPD2-METHYL-2,4-PENTANEDIOL T - 22
1f52_A_161f52   A     MPD2-METHYL-2,4-PENTANEDIOL D - 23
1f52_A_161f52   A     MPD2-METHYL-2,4-PENTANEDIOL E - 28
1f52_A_161f52   A     MPD2-METHYL-2,4-PENTANEDIOL Q - 29
1f52_A_161f52   A     MPD2-METHYL-2,4-PENTANEDIOL T - 32
1gg6_B_301gg6   B     APLN-(1-BENZYL-3,3,3-TRIFLUORO-2,2-DIHYDROXY-PROPYL)-ACETAMIDE Q - 34
1gg6_B_301gg6   B     APLN-(1-BENZYL-3,3,3-TRIFLUORO-2,2-DIHYDROXY-PROPYL)-ACETAMIDE T - 37
1gg6_B_301gg6   B     APLN-(1-BENZYL-3,3,3-TRIFLUORO-2,2-DIHYDROXY-PROPYL)-ACETAMIDE G - 38
1gg6_B_301gg6   B     APLN-(1-BENZYL-3,3,3-TRIFLUORO-2,2-DIHYDROXY-PROPYL)-ACETAMIDE F - 39
1gg6_B_301gg6   B     APF1,1,1-TRIFLUORO-3-ACETAMIDO-4-PHENYL BUTAN-2-ONE(N-ACETYL-L-PHENYLALANYL TRIFLUOROMETHYL KETONE) F - 41
1gg6_B_301gg6   B     APF1,1,1-TRIFLUORO-3-ACETAMIDO-4-PHENYL BUTAN-2-ONE(N-ACETYL-L-PHENYLALANYL TRIFLUOROMETHYL KETONE) C - 42
1h5r_A_1471h5r   A     G1PALPHA-D-GLUCOSE-1-PHOSPHATE G - 147
1h5r_A_1471h5r   A     G1PALPHA-D-GLUCOSE-1-PHOSPHATE V - 148
1h5r_A_1471h5r   A     G1PALPHA-D-GLUCOSE-1-PHOSPHATE E - 162
1jq5_A_1291jq5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 129
1jq5_A_1291jq5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 130
1jq5_A_1291jq5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 131
1jq5_A_1291jq5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 133
1kop_A_1081kop   A     ZNZINC ION H - 111
1kop_A_1081kop   A     AZIAZIDE ION H - 111
1kop_A_1081kop   A     ZNZINC ION V - 113
1kop_A_1081kop   A     AZIAZIDE ION V - 113
1kop_A_1081kop   A     AZIAZIDE ION V - 123
1ky9_A_2131ky9   A     MSESELENOMETHIONINE V - 215
1ky9_A_2131ky9   A     MSESELENOMETHIONINE N - 216
1ky9_A_2131ky9   A     MSESELENOMETHIONINE L - 217
1ky9_A_2131ky9   A     MSESELENOMETHIONINE N - 218
1ky9_A_2131ky9   A     MSESELENOMETHIONINE G - 219
1ky9_A_2131ky9   A     MSESELENOMETHIONINE E - 220
1ky9_A_2131ky9   A     MSESELENOMETHIONINE L - 221
1ky9_A_2131ky9   A     MSESELENOMETHIONINE I - 222
1pq7_A_1981pq7   A     ARGARGININE V - 210
1pq7_A_1981pq7   A     ARGARGININE S - 211
1pq7_A_1981pq7   A     ARGARGININE W - 212
1vcp_A_2221vcp   A     HGMERCURY (II) ION P - 222
1vcp_A_2221vcp   A     HGMERCURY (II) ION F - 224
1vcp_A_2221vcp   A     HGMERCURY (II) ION V - 230
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1a1r_A_1681a1r   A ZN1ZINC BINDING SITE, MOLECULE A.C - 171
1agj_A_1981agj   A SNACATALYTIC TETRAD OF SERINE PROTEASE.S - 211

Clusters included in this Subclass
CLUSTER: HA.4.32
CLUSTER: HA.4.55
CLUSTER: HA.5.15
CLUSTER: HA.5.40
CLUSTER: HA.6.6