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Information on SUBCLASS 5.1.4
Subclass Accession number: 7922
Subclass: 5.1.4 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 20.4 +/- 19.5
Average RMSD (Å) : 0.431 +/- 0.138

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXXXcGpXX
(φψ)-conformation: bbpaagpbb
Pattern: xxx[adegkrs][DNY][EGS][DHKNSTY][fiklt]x
Conservation:-0.606-0.749-0.718-0.3261.4541.953-0.003-0.408-0.596
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1amu_A_4071amu   A416424RWLSDGNIEEE-TTS-EEbxxaavxxb
1b6r_A_1601b6r   A167175ARGFDGSTVEE-TTS-EEbbbaavxbb
1g9g_A_4501g9g   A450458KFNADGTFQEE-TTS-EEbbxaavxbb
1ga6_A_2211ga6   A223231GLDSNGKLWEE-TTS-EEexxaavxxb
1gpm_A_1281gpm   A128136ALTADGKPLEE-TTS-EEbbxaavxwb
1l1y_A_4781l1y   A478486KLYDDGTFAEE-TTS-EEbbbaavxbb
1lci_*_4181lci   -425433YWDEDEHFFEE-TT--EEbbxaavxxb
1lqy_A_721lqy   A7785VTDENGTLYEE-TTS-EEbbxaavxxb
1m6k_A_1991m6k   A201209QDLDNSTKLEE-TTS-EEbbxaavxxb
1mdb_A_4091mdb   A416424RLTRDGYIVEE-TTS-EEbbxaavxbb
1o9l_A_4031o9l   A403411QVSKYGDLAEE-TTS-EEbbxaagpbb
1oew_A_671oew   A7684ISYGDGSSSEE-TTS-EEbbbaavxbb
1qho_A_6461qho   A653661IKRADGTIQEE-TTS-EExbxaavxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1amu_A_4071amu   A     MGMAGNESIUM ION Y - 409
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE T - 411
1amu_A_4071amu   A     MGMAGNESIUM ION T - 411
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE D - 413
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE Y - 425
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE G - 427
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE R - 428
1ga6_A_2211ga6   A     GOLGLYCEROL N - 221
1ga6_A_2211ga6   A     GOLGLYCEROL E - 222
1gpm_A_1281gpm   A     CITCITRIC ACID S - 142
1gpm_A_1281gpm   A     CITCITRIC ACID H - 143
1l1y_A_4781l1y   A     BGCBETA-D-GLUCOSE S - 489
1l1y_A_4781l1y   A     BGCBETA-D-GLUCOSE D - 490
1lqy_A_721lqy   A     NINICKEL (II) ION H - 97
1m6k_A_1991m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID K - 212
1m6k_A_1991m6k   A     MPD2-METHYL-2,4-PENTANEDIOL T - 213
1m6k_A_1991m6k   A     MPD2-METHYL-2,4-PENTANEDIOL G - 214
1m6k_A_1991m6k   A     MPD2-METHYL-2,4-PENTANEDIOL A - 215
1m6k_A_1991m6k   A     MPD2-METHYL-2,4-PENTANEDIOL G - 216
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE Y - 409
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE G - 412
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE V - 425
1oew_A_671oew   A     THRTHREONINE I - 76
1oew_A_671oew   A     SERSERINE S - 77
1oew_A_671oew   A     THRTHREONINE S - 77
1oew_A_671oew   A     SERSERINE Y - 78
1oew_A_671oew   A     THRTHREONINE Y - 78
1oew_A_671oew   A     SERSERINE G - 79
1oew_A_671oew   A     THRTHREONINE G - 79
1oew_A_671oew   A     SERSERINE D - 80
1qho_A_6461qho   A     MALMALTOSE Q - 648
1qho_A_6461qho   A     MALMALTOSE K - 650
1qho_A_6461qho   A     MALMALTOSE W - 662
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oew_A_671oew   A AC2THR BINDING SITE FOR CHAIN AS - 77
1oew_A_671oew   A AC1SER BINDING SITE FOR CHAIN AY - 78
1oew_A_671oew   A AC1SER BINDING SITE FOR CHAIN AG - 79

Clusters included in this Subclass
CLUSTER: HA.4.39
CLUSTER: HA.5.86
CLUSTER: HA.6.17