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Information on SUBCLASS 5.6.1
Subclass Accession number: 7942
Subclass: 5.6.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 9.5 +/- 13.2
Average RMSD (Å) : 0.327 +/- 0.090

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XXXXXXXpX
(φψ)-conformation: bbaaalgpb
Pattern: xx[adpstv]xxxx[aekqr]x
Conservation:-0.327-1.5430.226-1.3320.0670.1330.9501.6530.173
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1afr_A_3501afr   A352360PFSWIFDRQEEGGGTTEExbaaalvxb
1auo_A_531auo   A5563PVTINGGYEEEGGGTTEEwbaaavvpx
1bw0_A_1511bw0   A157165CRPENDWEAEEGGGTTEEbxaaavvxx
1dmt_A_6291dmt   A629637SWDLAGGQHEEGGGTTEEbbaaavvxx
1e0c_A_1991e0c   A199207MDPSRALRIEEGGGTTEExbaaalvxx
1e9i_A_2561e9i   A258266VLAGEGNKAEEGGGTSEExxaaavvxb
1ep3_A_1361ep3   A136144PNVKHGGQAEEGGGTTEExxaaavgxx
1fj2_A_531fj2   A5563PVTLNMNVAEEGGGTTEEpbaaalvxx
1g8k_B_841g8k   B8593FDAEKAGQMEEGGGTTEEbxaaalvpx
1oyw_A_4821oyw   A484492QNIAQHSALEEGGGTTEEbxaaalvpx
1pmi_*_591pmi   -6068KAIDLNNQTEETTTTTEEbxaaavvxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dmt_A_6291dmt   A     NAGN-ACETYL-D-GLUCOSAMINE H - 637
1g8k_B_841g8k   B     OC6CALCIUM ION, 6 WATERS COORDINATED E - 84
1g8k_B_841g8k   B     FESFE2/S2 (INORGANIC) CLUSTER F - 85
1g8k_B_841g8k   B     HGMERCURY (II) ION C - 95
1oyw_A_4821oyw   A     MSESELENOMETHIONINE Q - 484
1oyw_A_4821oyw   A     MSESELENOMETHIONINE S - 490
1oyw_A_4821oyw   A     MSESELENOMETHIONINE L - 492

Clusters included in this Subclass
CLUSTER: HA.4.25