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Information on SUBCLASS 6.2.1
Subclass Accession number: 7969
Subclass: 6.2.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 11.9 +/- 18.2
Average RMSD (Å) : 0.671 +/- 0.327

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXXXXppXXX
(φψ)-conformation: bbppgbapbb
Pattern: xxx[agpsv][dgnrst][ekqrst][dgnqrt]xxx
Conservation:-1.186-0.058-0.3900.9180.9121.5150.973-0.998-0.620-1.067
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c0t_B_601c0t   B6372IKKKDSTKWREE-TT--SEEbbpplbaxxb
1e6v_A_741e6v   A7584YQVSGTDVFVEEBTTS--EEbxppvbabbb
1e6y_A_10861e6y   A10861095YTISGTDIVCEEBTTS--EEbbxpvbaxxb
1hbn_A_711hbn   A7281YQVSTTDTYVEEBTTSS-EEbxxxvbaxbb
1i52_A_1411i52   A143152RAEPGKNAIAEE-TTSSSEEbxxpvbabxa
1krh_A_1441krh   A147156VTLPGTTETREE-TTSS-EExxxpvbaxbb
1l9m_A_4201l9m   A424433TKAVGSNARMEE-TTSS-EEbxxxvbaxxx
1lf2_A_2361lf2   A237246IKVPFLPFYVEE-SSS--EEbxxpgxaxbb
1m6k_A_2081m6k   A216225GFTANRTLQNEE-TTSS-EEbxxpvbaxbb
1nek_A_1231nek   A124133KNFGGEQAAREE-TTSSSEExxbxgbabxa
1o7d_D_6971o7d   D702711RLYPRQRHLEEE-TT-SSEEbbxwvbabbx
1pin_A_111pin   A1423RMSRSSGRVYEE-TTS--EEbbxxvbaxxb
1qhw_A_1391qhw   A143152FKVPRSNITVEE-SSS--EEbbxpGpapbb
1vrt_B_601vrt   B6372IKKKDSTKWREE-TTSS-EEbxxxlbabxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1hbn_A_711hbn   A     MGN2-METHYL-GLUTAMINE Y - 72
1hbn_A_711hbn   A     MGMAGNESIUM ION Y - 72
1krh_A_1441krh   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 144
1krh_A_1441krh   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 149
1krh_A_1441krh   A     FADFLAVIN-ADENINE DINUCLEOTIDE R - 156
1krh_A_1441krh   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 157
1krh_A_1441krh   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 158
1krh_A_1441krh   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 159
1m6k_A_2081m6k   A     KCXLYSINE NZ-CARBOXYLIC ACID K - 212
1m6k_A_2081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL T - 213
1m6k_A_2081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL G - 214
1m6k_A_2081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL A - 215
1m6k_A_2081m6k   A     MPD2-METHYL-2,4-PENTANEDIOL G - 216
1nek_A_1231nek   A     OAAOXALOACETATE ION F - 126
1nek_A_1231nek   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 126
1o7d_D_6971o7d   D     NAGN-ACETYL-D-GLUCOSAMINE C - 697
1o7d_D_6971o7d   D     NAGN-ACETYL-D-GLUCOSAMINE S - 698
1pin_A_111pin   A     1PG2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL S - 16
1pin_A_111pin   A     1PG2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL Y - 23
1pin_A_111pin   A     1PG2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL Y - 24

Clusters included in this Subclass
CLUSTER: HA.6.11