Information on SUBCLASS 12.3.1 |
Subclass Accession number: 8043
Subclass: 12.3.1 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 8 Average sequence ID (%) : 66.8 +/- 21.9 Average RMSD (Å) : 0.287 +/- 0.113 Consensus geometry
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Consensus Sequence: | RLGEHNIpVXEGpEQF |
(φψ)-conformation: | bblpapaabpagapbb |
Pattern: | [EQT] | [V] | [r] | [AL] | [G] | [E] | [DH] | [N] | [I] | [ADEKN] | [v] | [ltv] | [E] | [g] | [NST] | [E] | [Q] | [FK] | [iv] | [DNS] | [ASV] | [asv] | [KR] | [iv] | [I] | x |
Conservation: | -0.500 | 0.660 | -0.844 | -0.590 | 1.779 | 1.219 | 0.634 | 1.779 | 0.660 | -1.051 | -0.776 | -1.254 | 1.219 | -0.094 | -0.362 | 1.219 | 1.219 | -0.534 | -0.940 | -0.241 | -0.860 | -1.105 | 0.384 | -0.730 | 0.660 | -1.554 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a0j_A_64 | 1a0j | A | 64 | 89 | QVRLGEHNIAVNEGTEQFIDSVKVIM | EEEES-SBSSS--S--EEEEEEEEEE | xxbbvxabaabxavaxbbbxxabbbx |
1f7z_A_64 | 1f7z | A | 64 | 89 | QVRLGEHNINVLEGNEQFVNAAKIIK | EEEES-SBTTS--S--EEEEEEEEEE | bxbbvxaxaabxagaxbbbxxabbbx |
1fni_A_64 | 1fni | A | 64 | 89 | QVRLGEHNIDVLEGNEQFINAAKIIT | EEEES-SBTTS--S--EEEEEEEEEE | xxbbvxaxaabxagaxbbbxxabbbx |
1h4w_A_64 | 1h4w | A | 64 | 89 | QVRLGEHNIKVLEGNEQFINAVKIIR | EEEES-SBTTS--S--EEEEEEEEEE | bxbbvxaxaabxagaxbbbxxabbbx |
1hj8_A_64 | 1hj8 | A | 64 | 89 | EVRLGEHNIKVTEGSEQFISSSRVIR | EEEES-SBTTS--S--EEEEEEEEEE | xxbbvxabaabxavaxbbbxxabbbx |
1hj9_A_64 | 1hj9 | A | 64 | 89 | QVRLGEDNINVVEGNEQFISASKSIV | EEEES-SSTTS--S--EEEEEEEEEE | bxbbvxaxaabxagaxbbbxxabbbx |
1rfn_A_65 | 1rfn | A | 65 | 90 | TVVAGEHNIEETEHTEQKRNVIRIIP | EEEES-SBSSS--S--EEEEEEEEEE | bbbbvxaxaabbavaxbxbbxabbbx |
1trn_A_64 | 1trn | A | 64 | 89 | QVRLGEHNIEVLEGNEQFINAAKIIR | EEEES-SBSSS--S--EEEEEEEEEE | xxbbvxaxaabpagaxbbbxxabbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1a0j_A_64 | 1a0j | A | CACALCIUM ION | R - 66 |
1hj8_A_64 | 1hj8 | A | BAMBENZAMIDINE | E - 64 |
1hj8_A_64 | 1hj8 | A | BAMBENZAMIDINE | R - 66 |
1hj9_A_64 | 1hj9 | A | CACALCIUM ION | V - 75 |
1rfn_A_65 | 1rfn | A | CACALCIUM ION | G - 69 |
1rfn_A_65 | 1rfn | A | CACALCIUM ION | E - 70 |
1rfn_A_65 | 1rfn | A | CACALCIUM ION | H - 71 |
1rfn_A_65 | 1rfn | A | CACALCIUM ION | N - 72 |
1rfn_A_65 | 1rfn | A | CACALCIUM ION | I - 73 |
1rfn_A_65 | 1rfn | A | CACALCIUM ION | E - 74 |
1rfn_A_65 | 1rfn | A | CACALCIUM ION | E - 75 |
1rfn_A_65 | 1rfn | A | CACALCIUM ION | T - 76 |
1rfn_A_65 | 1rfn | A | CACALCIUM ION | E - 77 |
1rfn_A_65 | 1rfn | A | CACALCIUM ION | H - 78 |
1rfn_A_65 | 1rfn | A | CACALCIUM ION | E - 80 |
Clusters included in this Subclass |
CLUSTER: HA.11.3 |