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PDB code:

Information on SUBCLASS 7.4.1

Subclass Accession number: 806 Subclass: 7.4.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 1.1 (>75 %)  1.1.1 (>75 %)  1.1.1.37 (>75 %)   GO : GO:0016614 (>75 %)  GO:0016615 (>75 %)  GO:0016616 (>75 %)   SCOP : 56326 (>75 %)  56327 (>75 %)  56328 (>75 %)

Number of loops: 12 Average sequence ID (%) : 8.2 +/- 10.3 Average RMSD (Å) : 1.150 +/- 0.232 Consensus geometry d (Å): 7 delta (°): 135-180 theta (°): 135-180 rho (°): 180-225

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1es6_A_203	1es6	A	205	217	PGISFHPKLRPIL	EEEE--TTS--EE	wbbbabaabxxbx
1f39_A_200	1f39	A	202	214	FLQPLNPQYPMIP	EEE-SSTTS--EE	bbbxaxaaxxxbp
1gen_*_492	1gen	-	493	505	IWRTVTPRDKPMG	EEEESSTTS--EE	bbbbabaabxxxe
1h4r_A_270	1h4r	A	272	284	TIKPLDKKIDVFK	EEEESSTTS--EE	bbbxaxaaxxxbb
1kt7_A_85	1kt7	A	89	101	KYWGVASFLQKGN	EEEESSTTS--EE	xbbbaxaaxpbbb
1n13_B_88	1n13	B	95	107	VAIPKDKSLCGLI	EEEESSTTS-BEE	bxbxaxaaxxxbb
1nd6_A_292	1nd6	A	297	309	MYYRNETQHEPYP	EEEE--TTS--EE	bbbxabaabxpxx
1oga_E_66	1oga	E	67	79	SVSREKKESFPLT	EE--SSTTB--EE	bbbbabaabbwbb
1orv_A_171	1orv	A	172	184	IYVKNEPNLSSQR	EEEESSTTS--EE	xbbbabaaxxxbx
1qfm_A_99	1qfm	A	100	112	LYVQDSLEGEARV	EEEESSSSS--EE	xbbbabaaxxxbx
1uwv_A_230	1uwv	A	230	242	LYLAPDSEILETV	EEEESSSS--EEE	bbbbabaaxbxxa
2por_*_275	2por	-	281	293	IADNDLPNSDMVA	EEEE-SSS---EE	bbbbaxaapxxxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1kt7_A_85	1kt7	A	RTLRETINOL	M - 88
1kt7_A_85	1kt7	A	RTLRETINOL	K - 89
1kt7_A_85	1kt7	A	RTLRETINOL	Y - 90
1kt7_A_85	1kt7	A	RTLRETINOL	W - 91
1kt7_A_85	1kt7	A	RTLRETINOL	F - 96
1kt7_A_85	1kt7	A	RTLRETINOL	L - 97
1kt7_A_85	1kt7	A	RTLRETINOL	Q - 98
1kt7_A_85	1kt7	A	RTLRETINOL	D - 102
1kt7_A_85	1kt7	A	RTLRETINOL	H - 104
1n13_B_88	1n13	B	PVLPYRUVOYL GROUP	G - 105
1n13_B_88	1n13	B	PVLPYRUVOYL GROUP	L - 106
1n13_B_88	1n13	B	AG2AGMATINE	L - 106
1n13_B_88	1n13	B	PVLPYRUVOYL GROUP	I - 107
1n13_B_88	1n13	B	AG2AGMATINE	I - 107
1n13_B_88	1n13	B	PVLPYRUVOYL GROUP	M - 108
1n13_B_88	1n13	B	AG2AGMATINE	M - 108
1n13_B_88	1n13	B	PVLPYRUVOYL GROUP	E - 109
1n13_B_88	1n13	B	AG2AGMATINE	E - 109
1n13_B_88	1n13	B	MPD2-METHYL-2,4-PENTANEDIOL	E - 109
1nd6_A_292	1nd6	A	NAGN-ACETYL-D-GLUCOSAMINE	Y - 299
1nd6_A_292	1nd6	A	NAGN-ACETYL-D-GLUCOSAMINE	R - 300
1nd6_A_292	1nd6	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 301
1nd6_A_292	1nd6	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 302
1nd6_A_292	1nd6	A	NAGN-ACETYL-D-GLUCOSAMINE	Y - 308
1uwv_A_230	1uwv	A	MSESELENOMETHIONINE	L - 230
1uwv_A_230	1uwv	A	MSESELENOMETHIONINE	Y - 231
1uwv_A_230	1uwv	A	MSESELENOMETHIONINE	L - 232
1uwv_A_230	1uwv	A	PO4PHOSPHATE ION	A - 233
1uwv_A_230	1uwv	A	PO4PHOSPHATE ION	D - 235
1uwv_A_230	1uwv	A	PO4PHOSPHATE ION	S - 236
1uwv_A_230	1uwv	A	PO4PHOSPHATE ION	E - 237
2por_*_275	2por	*	OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL	I - 277
2por_*_275	2por	*	OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL	G - 279
2por_*_275	2por	*	OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL	G - 280
2por_*_275	2por	*	OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL	I - 281
2por_*_275	2por	*	OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL	N - 284
2por_*_275	2por	*	OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL	L - 286
2por_*_275	2por	*	OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL	P - 287
2por_*_275	2por	*	OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL	N - 288
2por_*_275	2por	*	OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL	S - 289
2por_*_275	2por	*	OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL	A - 293
2por_*_275	2por	*	OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL	D - 294
2por_*_275	2por	*	OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL	L - 295
2por_*_275	2por	*	OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL	G - 296
2por_*_275	2por	*	OTE2-{2-[2-(2-OCTYLOXY-ETHOXY)-ETHOXYL]-ETHOXY}ETHANOL	V - 297

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1uwv_A_230	1uwv	A	AC5PO4 BINDING SITE FOR CHAIN A	S - 236

Clusters included in this Subclass

CLUSTER: HA.6.73

CLUSTER: HA.7.18

CLUSTER: HA.8.13

CLUSTER: HA.8.22

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