Logo
Information on SUBCLASS 0.1.4
Subclass Accession number: 8066
Subclass: 0.1.4 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 24

Average sequence ID (%) : 10.3 +/- 14.8
Average RMSD (Å) : 0.513 +/- 0.151

Consensus geometry
d (Å): 5 delta (°): 0-45 theta (°): 0-45 rho (°): 135-180
Consensus Sequence: pXXX
(φψ)-conformation: aabb
Pattern: xxxx[adgknqrst]xxx
Conservation:-0.004-0.3290.303-1.8071.4930.7280.400-0.784
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1f0x_A_4751f0x   A475482PEIDSQLVHHHHTTEEaaaaaaba
1gnl_A_3141gnl   A314321DSYKDRVYHHHHTTEEaaaaaaxb
1gpe_A_1371gpe   A142149EYMKKAEAHHHHHTEEaaaaaabb
1hbn_A_921hbn   A98105WDDIRRTVHHHHHTEEaaaaaabb
1i50_B_4881i50   B491498TLSHLRRTHHHHTTEEaaaaaaxb
1ih7_A_1801ih7   A180187SEIIDKIIHHHHTTEEaaaaaaxb
1jcl_A_31jcl   A916LRALKLMDHHHHHTEEaaaaaaxx
1jkf_A_4391jkf   A453460TEFCTRVSHHHHTTEEaaaaaabb
1k8q_A_1671k8q   A167174PKLAKRIKHHHHTTEEaaaaaaba
1kcw_*_2321kcw   -233240DFQESNRMHHHHTTEEaaaaaaxx
1kcw_*_9311kcw   -932939EFIESNKMHHHHHTEEaaaaaaxx
1m1n_A_221m1n   A2633KDRNKHLAHHHHTTEEaaaaaabb
1m6i_A_2751m6i   A275282AEVKSRTTHHHHHTEEaaaaaabb
1n4p_B_691n4p   B7481EWIYSLQVHHHHTTEEaaaaaaxx
1nj1_A_3841nj1   A405412ERMESEIRHHHHTTEEaaaaaabb
1noy_B_1771noy   B177184QEILDRVIHHHHHTEEaaaaaaxb
1o0s_A_3501o0s   A351358EEACNRIYHHHHHTEEaaaaaabb
1p1j_A_4381p1j   A453460TEFCTRVSHHHHHTEEaaaaaabb
1p3w_A_3461p3w   A346353DELAHSSIHHHHHTEEaaaaaabb
1tca_*_131tca   -1421SVLDAGLTHHHHHTEEaaaaaabb
1un8_A_1721un8   A180187QYAASNTFHHHHHTEEaaaaaabb
1zin_*_1171zin   -121128MERLTGRRHHHHHTEEaaaaaaxb
3pcg_M_4983pcg   M499506EAVQQLIAHHHHTTEEaaaaaaxx
3thi_A_933thi   A94101FALQGAKRHHHHHTEEaaaaaabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f0x_A_4751f0x   A     FADFLAVIN-ADENINE DINUCLEOTIDE H - 489
1gpe_A_1371gpe   A     NAGN-ACETYL-D-GLUCOSAMINE F - 141
1gpe_A_1371gpe   A     NAGN-ACETYL-D-GLUCOSAMINE K - 145
1hbn_A_921hbn   A     ZNZINC ION R - 102
1jcl_A_31jcl   A     HPD1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE D - 16
1jcl_A_31jcl   A     HPD1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE T - 18
1jkf_A_4391jkf   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 439
1jkf_A_4391jkf   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 441
1jkf_A_4391jkf   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 442
1jkf_A_4391jkf   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 445
1kcw_*_2321kcw   *     CUCOPPER (II) ION Y - 241
1kcw_*_9311kcw   *     CUCOPPER (II) ION E - 935
1kcw_*_9311kcw   *     CUCOPPER (II) ION K - 938
1kcw_*_9311kcw   *     CUCOPPER (II) ION H - 940
1o0s_A_3501o0s   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE M - 360
1o0s_A_3501o0s   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE D - 361
1p1j_A_4381p1j   A     PO4PHOSPHATE ION D - 438
1p1j_A_4381p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE D - 438
1p1j_A_4381p1j   A     CRYPROPANE-1,2,3-TRIOL D - 438
1p1j_A_4381p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE S - 439
1p1j_A_4381p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE L - 441
1p1j_A_4381p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE A - 442
1zin_*_1171zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE R - 123
1zin_*_1171zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE L - 124
1zin_*_1171zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 126
1zin_*_1171zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE R - 127
1zin_*_1171zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE R - 128
1zin_*_1171zin   *     ZNZINC ION C - 130
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1kcw_*_9311kcw   * CU5LABILE CU BINDING SITE IN DOMAIN 6.E - 935
1kcw_*_9311kcw   * CU5LABILE CU BINDING SITE IN DOMAIN 6.H - 940

Clusters included in this Subclass
CLUSTER: HE.1.17
CLUSTER: HE.2.20