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Information on SUBCLASS 0.1.23
Subclass Accession number: 8085
Subclass: 0.1.23 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 27.5 +/- 26.9
Average RMSD (Å) : 0.460 +/- 0.152

Consensus geometry
d (Å): 7 delta (°): 135-180 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: hhXp
(φψ)-conformation: aaba
Pattern: x[KS][ILV][CIV][AEN]x[flv][AS][EGKQT][EKT][FL]x[CLV]x[AITV][ADQ]
Conservation:-0.7331.4161.2980.618-0.486-1.221-1.2410.944-1.2040.1951.979-0.3320.093-0.730-0.290-0.306
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aj6_*_1201aj6   -120135VSVVNALSQKLELVIQHHHHHHTEEEEEEEEEaaaaaaababbbbbbb
1lk5_A_1041lk5   A107122EKIIEYRAGTFIVLVDHHHHHHTEEEEEEEEEaaaaaaaxabbbbbbx
1m0s_A_1001m0s   A103118EKIVAALAKKFICIVDHHHHHHHEEEEEEEEEaaaaaaaxabxbxbbx
1o8b_A_1001o8b   A103118EKIIASVAEKFICIADHHHHHHHEEEEEEEEEaaaaaaaxabxbxbbx
1pvg_A_1451pvg   A146161AKLCNIFSTEFILETAHHHHHHTEEEEEEEEEaaaaaaababbbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aj6_*_1201aj6   *     NOVNOVOBIOCIN V - 120
1m0s_A_1001m0s   A     CITCITRIC ACID L - 100
1m0s_A_1001m0s   A     CITCITRIC ACID E - 103
1m0s_A_1001m0s   A     CITCITRIC ACID I - 116
1o8b_A_1001o8b   A     ABFBETA-D-ARABINOFURANOSE-5'-PHOSPHATE L - 100
1o8b_A_1001o8b   A     MSESELENOMETHIONINE T - 101
1o8b_A_1001o8b   A     MSESELENOMETHIONINE R - 102
1o8b_A_1001o8b   A     ABFBETA-D-ARABINOFURANOSE-5'-PHOSPHATE E - 103
1o8b_A_1001o8b   A     MSESELENOMETHIONINE I - 105
1o8b_A_1001o8b   A     MSESELENOMETHIONINE I - 106
1o8b_A_1001o8b   A     MSESELENOMETHIONINE F - 113
1o8b_A_1001o8b   A     MSESELENOMETHIONINE C - 115
1o8b_A_1001o8b   A     ABFBETA-D-ARABINOFURANOSE-5'-PHOSPHATE I - 116
1o8b_A_1001o8b   A     ABFBETA-D-ARABINOFURANOSE-5'-PHOSPHATE D - 118
1pvg_A_1451pvg   A     MGMAGNESIUM ION G - 145
1pvg_A_1451pvg   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER G - 145
1pvg_A_1451pvg   A     MSESELENOMETHIONINE A - 146
1pvg_A_1451pvg   A     MGMAGNESIUM ION A - 146
1pvg_A_1451pvg   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 146
1pvg_A_1451pvg   A     MSESELENOMETHIONINE K - 147
1pvg_A_1451pvg   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 147
1pvg_A_1451pvg   A     MSESELENOMETHIONINE L - 148
1pvg_A_1451pvg   A     MSESELENOMETHIONINE N - 150
1pvg_A_1451pvg   A     MSESELENOMETHIONINE I - 151
1pvg_A_1451pvg   A     MSESELENOMETHIONINE F - 152
1pvg_A_1451pvg   A     MSESELENOMETHIONINE S - 153
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o8b_A_1001o8b   A AC2ABF BINDING SITE FOR CHAIN FE - 103

Clusters included in this Subclass
CLUSTER: HE.0.14