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Information on SUBCLASS 0.1.28
Subclass Accession number: 8090
Subclass: 0.1.28 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 22.2 +/- 38.4
Average RMSD (Å) : 0.525 +/- 0.250

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 45-90 rho (°): 45-90
Consensus Sequence: XhXX
(φψ)-conformation: aabb
Pattern: xxxxxxxxx
Conservation:1.542-0.487-0.373-0.487-0.373-0.0311.869-0.830-0.830
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c7s_A_3911c7s   A391399ELTEVGGQRHHHHTTTEEaaaaaaabb
1d7k_B_2771d7k   B277285RYYVASAFTHHHHTTTEEaaaaaaabb
1f3t_A_2771f3t   A277285RYYVASAFTHHHHGGGEEaaaaaaabb
1hkv_A_3031hkv   A303311RAIAGPGTIHHHHSTTEEaaaaaaabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d7k_B_2771d7k   B     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) R - 277
1d7k_B_2771d7k   B     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) Y - 278
1f3t_A_2771f3t   A     PLPPYRIDOXAL-5'-PHOSPHATE R - 277
1f3t_A_2771f3t   A     PUT1,4-DIAMINOBUTANE R - 277
1f3t_A_2771f3t   A     PLPPYRIDOXAL-5'-PHOSPHATE Y - 278
1hkv_A_3031hkv   A     PLPPYRIDOXAL-5'-PHOSPHATE R - 303
1hkv_A_3031hkv   A     LYSLYSINE R - 303
1hkv_A_3031hkv   A     PLPPYRIDOXAL-5'-PHOSPHATE A - 304
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1hkv_A_3031hkv   A PLAPLP BINDING SITE FOR CHAIN AR - 303

Clusters included in this Subclass
CLUSTER: HE.3.169