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Information on SUBCLASS 0.1.39
Subclass Accession number: 8101
Subclass: 0.1.39 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 6.2 +/- 9.0
Average RMSD (Å) : 0.667 +/- 0.231

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: Xphp
(φψ)-conformation: aabb
Pattern: xxx[ELM]x[AW][AFL][AKS][AFK]x[HRS][ADN][DR][IV][HRT]x
Conservation:-0.684-0.282-0.282-0.282-1.2210.658-0.2820.388-0.953-0.9530.388-0.0141.0152.9340.254-0.684
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1g8m_A_1281g8m   A130145VALLRAAAKNHARVTVHHHHHHHHHTTTT-EEaaaaaaaaaaaaaxxb
1obd_A_531obd   A5974KLSEFWFKFLSNDVRNHHHHHHHHHTTTT-EEaaaaaaaaaaaaabxb
1pox_A_381pox   A3853NSIMDALSAERDRIHYHHHHHHHHHTTTTSEEaaaaaaaaaaaaabbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g8m_A_1281g8m   A     GGUANOSINE-5'-MONOPHOSPHATE G - 128
1g8m_A_1281g8m   A     GGUANOSINE-5'-MONOPHOSPHATE G - 129
1g8m_A_1281g8m   A     GGUANOSINE-5'-MONOPHOSPHATE V - 130
1g8m_A_1281g8m   A     GGUANOSINE-5'-MONOPHOSPHATE L - 132
1g8m_A_1281g8m   A     MSESELENOMETHIONINE T - 144
1g8m_A_1281g8m   A     GGUANOSINE-5'-MONOPHOSPHATE T - 144
1obd_A_531obd   A     MGMAGNESIUM ION L - 57
1obd_A_531obd   A     MGMAGNESIUM ION T - 58
1obd_A_531obd   A     AMPADENOSINE MONOPHOSPHATE K - 59
1obd_A_531obd   A     MGMAGNESIUM ION S - 61
1obd_A_531obd   A     AMPADENOSINE MONOPHOSPHATE E - 62
1obd_A_531obd   A     MGMAGNESIUM ION F - 65
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1obd_A_531obd   A AC6MG BINDING SITE FOR CHAIN AS - 61
1obd_A_531obd   A AC7AMP BINDING SITE FOR CHAIN AE - 62
1obd_A_531obd   A AC4SO4 BINDING SITE FOR CHAIN AR - 73
1obd_A_531obd   A AC4SO4 BINDING SITE FOR CHAIN AN - 74

Clusters included in this Subclass
CLUSTER: HE.6.228