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Information on SUBCLASS 1.2.7
Subclass Accession number: 8143
Subclass: 1.2.7 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 19

Average sequence ID (%) : 15.1 +/- 17.1
Average RMSD (Å) : 0.674 +/- 0.169

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXcXX
(φψ)-conformation: aalbb
Pattern: x[adeknrs][adekqrt]x[AGKNR]xxx
Conservation:-0.421-0.0490.115-0.5582.169-0.676-0.579-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a4m_A_1951a4m   A204211AVKNGIHRHHHHT-EEaaaavxxb
1ars_*_3671ars   -374380REEFGVY.HHHH-EE.aaaavbb.
1b16_A_1491b16   A169176APITGVTAHHHHSEEEaaaavbxb
1bw0_A_3611bw0   A369375LEEENVQ.HHHH-EE.aaaalbb.
1cer_O_841cer   O8491WAEAGVGVHHHHTEEEaaaavxab
1dv1_A_2501dv1   A264271CVDIGYRGHHHHT-EEaaaavxbe
1gg4_A_61gg4   A1017TDILNGELHHHTTEEEaaaalbxx
1i01_A_1121i01   A125132MMKKRHGRHHHHT-EEaaaalbbb
1jeh_A_1931jeh   A202209YSRLGSKVHHHHT-EEaaaaNxxx
1khb_A_2491khb   A255262AKEEGWLAHHHHT-EEaaaavbbb
1lii_A_981lii   A107114CDKEGLATHHHHT-EEaaaavxxb
1lvl_*_1811lvl   -190197YRKLGAQVHHHHT-EEaaaagxxb
1m6i_A_3101m6i   A323330ARALGTEVHHHHT-EEaaaavbbb
1o4s_A_3251o4s   A333339LEEKKVA.HHHH-EE.aaaalbb.
1odz_A_2921odz   A309316AEARGKIPHHHHT-EEaaaavbbx
1onw_A_1131onw   A123130LNEEGISAHHHHTSEEaaaagbbb
1qpg_*_3471qpg   -359366SSAAGNTVHHHHT-EEaaaagxxb
1spi_A_3071spi   A314321VEQAGGKGHHHHS-EEaaaagpbb
1yaa_A_3671yaa   A374380EETHAVY.HHHH-EE.aaaalbx.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a4m_A_1951a4m   A     ZNZINC ION H - 214
1a4m_A_1951a4m   A     PRH6-HYDROXY-1,6-DIHYDRO PURINE NUCLEOSIDE H - 214
1b16_A_1491b16   A     NAQNICOTINAMIDE ADENINE DINUCLEOTIDE 3-PENTANONE ADDUCT Y - 151
1b16_A_1491b16   A     NAQNICOTINAMIDE ADENINE DINUCLEOTIDE 3-PENTANONE ADDUCT K - 155
1b16_A_1491b16   A     NAQNICOTINAMIDE ADENINE DINUCLEOTIDE 3-PENTANONE ADDUCT I - 179
1b16_A_1491b16   A     NAQNICOTINAMIDE ADENINE DINUCLEOTIDE 3-PENTANONE ADDUCT N - 180
1b16_A_1491b16   A     NAQNICOTINAMIDE ADENINE DINUCLEOTIDE 3-PENTANONE ADDUCT P - 181
1cer_O_841cer   O     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE E - 94
1dv1_A_2501dv1   A     PO4PHOSPHATE ION E - 276
1jeh_A_1931jeh   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 194
1jeh_A_1931jeh   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 197
1jeh_A_1931jeh   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 198
1lvl_*_1811lvl   *     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 181
1lvl_*_1811lvl   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 181
1lvl_*_1811lvl   *     FADFLAVIN-ADENINE DINUCLEOTIDE I - 182
1lvl_*_1811lvl   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 182
1lvl_*_1811lvl   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 183
1lvl_*_1811lvl   *     FADFLAVIN-ADENINE DINUCLEOTIDE E - 185
1lvl_*_1811lvl   *     FADFLAVIN-ADENINE DINUCLEOTIDE L - 186
1lvl_*_1811lvl   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 200
1m6i_A_3101m6i   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 311
1m6i_A_3101m6i   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 314
1onw_A_1131onw   A     EGLETHYLENE GLYCOL E - 114
1onw_A_1131onw   A     EGLETHYLENE GLYCOL L - 117
1onw_A_1131onw   A     EGLETHYLENE GLYCOL A - 118
1onw_A_1131onw   A     EGLETHYLENE GLYCOL K - 119
1onw_A_1131onw   A     EGLETHYLENE GLYCOL R - 121
1onw_A_1131onw   A     KCXLYSINE NZ-CARBOXYLIC ACID L - 133
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1b16_A_1491b16   A AC1ACTIVE SITE, CATALYIC TRIAD.Y - 151
1b16_A_1491b16   A AC1ACTIVE SITE, CATALYIC TRIAD.K - 155

Clusters included in this Subclass
CLUSTER: HE.1.12