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Information on SUBCLASS 1.2.8
Subclass Accession number: 8144
Subclass: 1.2.8 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 13.2 +/- 14.4
Average RMSD (Å) : 0.523 +/- 0.117

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXchp
(φψ)-conformation: aalbb
Pattern: xxx[AFGLMY][AEKQRS][akqrst]x[EGKNR][afilw][dhknqtw][cgipvy]
Conservation:-0.473-0.162-0.492-0.3811.7100.065-1.1402.0820.011-0.773-0.449
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b6r_A_111b6r   A1727RQAGEPLGIAVHHHHGGGTEEEaaaaaaavbxb
1bud_A_261bud   A4151TESYSYLKIDIHHHHHTTTEEEaaaaaaavbxx
1cjw_A_1651cjw   A165175VPFYQRFGFHPHHHHHTTTEEEaaaaaaavxbw
1dhr_*_171dhr   -2333VQAFRARNWWVHHHHHTTT-EEaaaaaaavxxb
1ejd_A_4021ejd   A403413EDKLRALGANIHHHHHTTT-EEaaaaaaagxbb
1gz6_B_1621gz6   B179189VIEGRKNNIHCHHHHGGGTEEEaaaaaaalbbb
1nhp_*_1911nhp   -198208TEEMEANNITIHHHHHTTTEEEaaaaaaalbxb
1nsa_*_611nsa   -6575EDFLEQNELQYHHHHHTTT-EEaaaaaaavxxb
1nvt_A_2371nvt   A239249LKEAKKVNAKTHHHHHTTT-EEaaaaaaalxxx
1ozh_A_5011ozh   A502512KAYAESFGAKGHHHHHTTTSEEaaaaaaavxxb
1pjs_A_831pjs   A90100SDAAESRRIFCHHHHHTTT-EEaaaaaaalbpb
1ps9_A_3831ps9   A389399AINAAARGHQVHHHHHTTT-EEaaaaaaagxxb
1rkd_*_701rkd   -7483RQQLATDNID.HHHHHTTTEE.aaaaaaavbx.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cjw_A_1651cjw   A     COTCOA-S-ACETYL TRYPTAMINE F - 167
1cjw_A_1651cjw   A     COTCOA-S-ACETYL TRYPTAMINE Y - 168
1cjw_A_1651cjw   A     COTCOA-S-ACETYL TRYPTAMINE R - 170
1cjw_A_1651cjw   A     COTCOA-S-ACETYL TRYPTAMINE F - 171
1dhr_*_171dhr   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 17
1dhr_*_171dhr   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 18
1dhr_*_171dhr   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 19
1dhr_*_171dhr   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 36
1dhr_*_171dhr   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 37
1ejd_A_4021ejd   A     PO4PHOSPHATE ION E - 403
1ejd_A_4021ejd   A     PO4PHOSPHATE ION D - 404
1ejd_A_4021ejd   A     PO4PHOSPHATE ION R - 407
1ejd_A_4021ejd   A     PO4PHOSPHATE ION I - 413
1ejd_A_4021ejd   A     PO4PHOSPHATE ION E - 414
1ejd_A_4021ejd   A     PO4PHOSPHATE ION R - 415
1ejd_A_4021ejd   A     PO4PHOSPHATE ION K - 417
1gz6_B_1621gz6   B     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE Y - 164
1gz6_B_1621gz6   B     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE K - 168
1gz6_B_1621gz6   B     MSESELENOMETHIONINE L - 171
1gz6_B_1621gz6   B     MSESELENOMETHIONINE L - 172
1gz6_B_1621gz6   B     MSESELENOMETHIONINE L - 174
1gz6_B_1621gz6   B     MSESELENOMETHIONINE A - 175
1gz6_B_1621gz6   B     MSESELENOMETHIONINE L - 178
1gz6_B_1621gz6   B     MSESELENOMETHIONINE N - 185
1gz6_B_1621gz6   B     MSESELENOMETHIONINE I - 187
1gz6_B_1621gz6   B     MSESELENOMETHIONINE C - 189
1ozh_A_5011ozh   A     PEGDI(HYDROXYETHYL)ETHER E - 506
1ozh_A_5011ozh   A     PEGDI(HYDROXYETHYL)ETHER S - 507
1ozh_A_5011ozh   A     PEGDI(HYDROXYETHYL)ETHER F - 508
1ozh_A_5011ozh   A     PEGDI(HYDROXYETHYL)ETHER G - 509
1ozh_A_5011ozh   A     PEGDI(HYDROXYETHYL)ETHER A - 510
1pjs_A_831pjs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 85
1pjs_A_831pjs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 88
1ps9_A_3831ps9   A     FADFLAVIN-ADENINE DINUCLEOTIDE P - 383
1ps9_A_3831ps9   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 384
1ps9_A_3831ps9   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 385
1ps9_A_3831ps9   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 402
1ps9_A_3831ps9   A     FADFLAVIN-ADENINE DINUCLEOTIDE D - 403

Clusters included in this Subclass
CLUSTER: HE.3.45