Information on SUBCLASS 2.1.7 |
Subclass Accession number: 8193
Subclass: 2.1.7 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 7 Average sequence ID (%) : 20.5 +/- 19.1 Average RMSD (Å) : 0.729 +/- 0.160 Consensus geometry
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Consensus Sequence: | XpcXXh |
(φψ)-conformation: | aalpbb |
Pattern: | x | [egkst] | [alt] | [ALM] | [AKT] | [AGKM] | [hnrt] | [GK] | [acgitv] | [aegrt] | [AFIPV] | [adnv] | [acklv] |
Conservation: | -0.397 | -0.822 | -0.013 | 1.953 | 1.329 | 0.109 | 0.106 | 1.456 | -1.121 | -0.784 | -0.066 | -1.011 | -0.739 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1c4k_A_224 | 1c4k | A | 228 | 240 | NSALAMAGGRPVY | HHHTTTT--EEEE | aaaaaaavxbxbx |
1cbf_*_170 | 1cbf | - | 170 | 182 | LTDLAKHKCTIAL | HHHHHTT-SEEEE | aaaaaaalbxbbx |
1d7k_B_74 | 1d7k | B | 77 | 89 | VKTLAATGTGFDC | HHHHHTTT-EEEE | aaaaaaagxxbxb |
1d9e_A_1122 | 1d9e | A | 1125 | 1137 | VEAMAKTGAVINV | HHHHHHTT-EEEE | aaaaaaavxxbbx |
1ebd_A_85 | 1ebd | A | 104 | 116 | EGLLKGNKVEIVK | HHHHHTTT-EEEE | aaaaaaalbxxbx |
1fxp_A_1108 | 1fxp | A | 1111 | 1123 | LLAAAKTGRAVNV | HHHHHTTTSEEEE | aaaaaaavxxbbb |
1l7e_A_106 | 1l7e | A | 109 | 121 | VEALTKRKITAYA | HHHHHTTT-EEEE | aaaaaaalxxbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1c4k_A_224 | 1c4k | A | PLPPYRIDOXAL-5'-PHOSPHATE | S - 225 |
1c4k_A_224 | 1c4k | A | PLPPYRIDOXAL-5'-PHOSPHATE | V - 226 |
1cbf_*_170 | 1cbf | * | SAHS-ADENOSYL-L-HOMOCYSTEINE | L - 182 |
1cbf_*_170 | 1cbf | * | SAHS-ADENOSYL-L-HOMOCYSTEINE | F - 183 |
1d7k_B_74 | 1d7k | B | LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) | D - 88 |
1fxp_A_1108 | 1fxp | A | PO4PHOSPHATE ION | K - 1124 |
Clusters included in this Subclass |
CLUSTER: HE.3.121 |
CLUSTER: HE.5.116 |