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PDB code:

Information on SUBCLASS 2.2.11

Subclass Accession number: 8210 Subclass: 2.2.11 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 9 Average sequence ID (%) : 11.9 +/- 20.0 Average RMSD (Å) : 0.833 +/- 0.173 Consensus geometry d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1c9k_A_104	1c9k	A	120	130	AACQRCPAKVV	HHHHH--SEEE	aaaaaxaxxbb
1gvh_A_305	1gvh	A	310	320	ELGQSLPRFTA	HHHHTSSSEEE	aaaaaxabbbb
1idk_*_28	1idk	-	32	42	VSYLGDDEARV	HHHHHSSS-EE	aaaaaxabpbb
1jg7_A_268	1jg7	A	271	281	WETMASDAVML	HHHHTSSSEEE	aaaaaxabxxb
1l5w_A_390	1l5w	A	392	400	VWAKLAVVH..	HHHHH-SEE..	aaaaaxabb..
1o7d_C_502	1o7d	C	502	512	PLTQTAERFQV	HHHHH-SEEEE	aaaaaxabbbb
2bgt_*_268	2bgt	-	271	281	WETMASDAVML	HHHHHSSSEEE	aaaaaxabxxb
2kfn_A_336	2kfn	A	344	354	AKLEKAPVFAF	HHHHTSSSEEE	aaaaaxabbxb
5rub_A_336	5rub	A	340	349	AYMLTQDEAQ.	HHHHH-SEEE.	aaaaaxabbb.

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1c9k_A_104	1c9k	A	PO4PHOSPHATE ION	V - 132
1jg7_A_268	1jg7	A	MNMANGANESE (II) ION	L - 268
1jg7_A_268	1jg7	A	UDPURIDINE-5'-DIPHOSPHATE	L - 268
1jg7_A_268	1jg7	A	UDPURIDINE-5'-DIPHOSPHATE	R - 269
1jg7_A_268	1jg7	A	UDPURIDINE-5'-DIPHOSPHATE	E - 272
2kfn_A_336	2kfn	A	ZNZINC ION	D - 355
2kfn_A_336	2kfn	A	MNMANGANESE (II) ION	D - 355
2kfn_A_336	2kfn	A	SSULFUR ATOM	D - 355
2kfn_A_336	2kfn	A	ZNZINC ION	T - 356
2kfn_A_336	2kfn	A	MNMANGANESE (II) ION	T - 356
2kfn_A_336	2kfn	A	SSULFUR ATOM	T - 356
2kfn_A_336	2kfn	A	ZNZINC ION	E - 357
2kfn_A_336	2kfn	A	MNMANGANESE (II) ION	E - 357
2kfn_A_336	2kfn	A	SSULFUR ATOM	E - 357

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
2kfn_A_336	2kfn	A	EXOEXONUCLEASE ACTIVE SITE.	D - 355

Clusters included in this Subclass

CLUSTER: HE.3.72

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