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Information on SUBCLASS 2.3.9
Subclass Accession number: 8233
Subclass: 2.3.9 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 11.5 +/- 13.1
Average RMSD (Å) : 0.425 +/- 0.096

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: ppcXhX
(φψ)-conformation: aalabb
Pattern: xxx[AFL][KNQ][EQR][GKN]x[ALY]x[LV][LVW]x
Conservation:-0.642-0.849-0.457-0.1821.3441.5790.686-0.918-0.236-0.9181.6320.155-1.194
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c0d_A_2681c0d   A268280GYLFNQNIAPVWLHHHHHTTSS-EEEaaaaaalabxbbx
1cs1_A_1021cs1   A109121DSLAKRGCYRVLFHHHHTTTS-EEEEaaaaaavabbbbx
1gmx_A_91gmx   A1325HQKLQEKEAVLVDHHHHHTT--EEEEaaaaaavabbbbb
1pjs_A_471pjs   A5062TVWANEGMLTLVEHHHHTTTS-EEEEaaaaaavabbbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cs1_A_1021cs1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) S - 104
1gmx_A_91gmx   A     ACTACETATE ION V - 9
1gmx_A_91gmx   A     EDO1,2-ETHANEDIOL V - 9
1gmx_A_91gmx   A     ACTACETATE ION A - 10
1gmx_A_91gmx   A     EDO1,2-ETHANEDIOL A - 10
1gmx_A_91gmx   A     ACTACETATE ION D - 11
1gmx_A_91gmx   A     EDO1,2-ETHANEDIOL H - 13
1gmx_A_91gmx   A     EDO1,2-ETHANEDIOL Q - 14
1gmx_A_91gmx   A     EDO1,2-ETHANEDIOL K - 15
1gmx_A_91gmx   A     EDO1,2-ETHANEDIOL Q - 17
1gmx_A_91gmx   A     EDO1,2-ETHANEDIOL E - 18
1gmx_A_91gmx   A     CSSS-MERCAPTOCYSTEINE V - 24
1gmx_A_91gmx   A     CSSS-MERCAPTOCYSTEINE D - 25

Clusters included in this Subclass
CLUSTER: HE.4.198
CLUSTER: HE.5.300