Information on SUBCLASS 2.3.9 |
Subclass Accession number: 8233
Subclass: 2.3.9 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 11.5 +/- 13.1 Average RMSD (Å) : 0.425 +/- 0.096 Consensus geometry
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Consensus Sequence: | ppcXhX |
(φψ)-conformation: | aalabb |
Pattern: | x | x | x | [AFL] | [KNQ] | [EQR] | [GKN] | x | [ALY] | x | [LV] | [LVW] | x |
Conservation: | -0.642 | -0.849 | -0.457 | -0.182 | 1.344 | 1.579 | 0.686 | -0.918 | -0.236 | -0.918 | 1.632 | 0.155 | -1.194 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1c0d_A_268 | 1c0d | A | 268 | 280 | GYLFNQNIAPVWL | HHHHHTTSS-EEE | aaaaaalabxbbx |
1cs1_A_102 | 1cs1 | A | 109 | 121 | DSLAKRGCYRVLF | HHHHTTTS-EEEE | aaaaaavabbbbx |
1gmx_A_9 | 1gmx | A | 13 | 25 | HQKLQEKEAVLVD | HHHHHTT--EEEE | aaaaaavabbbbb |
1pjs_A_47 | 1pjs | A | 50 | 62 | TVWANEGMLTLVE | HHHHTTTS-EEEE | aaaaaavabbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1cs1_A_102 | 1cs1 | A | LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) | S - 104 |
1gmx_A_9 | 1gmx | A | ACTACETATE ION | V - 9 |
1gmx_A_9 | 1gmx | A | EDO1,2-ETHANEDIOL | V - 9 |
1gmx_A_9 | 1gmx | A | ACTACETATE ION | A - 10 |
1gmx_A_9 | 1gmx | A | EDO1,2-ETHANEDIOL | A - 10 |
1gmx_A_9 | 1gmx | A | ACTACETATE ION | D - 11 |
1gmx_A_9 | 1gmx | A | EDO1,2-ETHANEDIOL | H - 13 |
1gmx_A_9 | 1gmx | A | EDO1,2-ETHANEDIOL | Q - 14 |
1gmx_A_9 | 1gmx | A | EDO1,2-ETHANEDIOL | K - 15 |
1gmx_A_9 | 1gmx | A | EDO1,2-ETHANEDIOL | Q - 17 |
1gmx_A_9 | 1gmx | A | EDO1,2-ETHANEDIOL | E - 18 |
1gmx_A_9 | 1gmx | A | CSSS-MERCAPTOCYSTEINE | V - 24 |
1gmx_A_9 | 1gmx | A | CSSS-MERCAPTOCYSTEINE | D - 25 |
Clusters included in this Subclass |
CLUSTER: HE.4.198 |
CLUSTER: HE.5.300 |