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Information on SUBCLASS 2.5.4
Subclass Accession number: 8251
Subclass: 2.5.4 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 11.3 +/- 16.7
Average RMSD (Å) : 0.670 +/- 0.082

Consensus geometry
d (Å): 11 delta (°): 0-45 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: pXXXXX
(φψ)-conformation: aappbb
Pattern: xxx[ail]xxx[adpv]xx
Conservation:0.664-1.322-1.0051.4861.1350.7790.130-0.095-0.660-1.112
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bdf_A_781bdf   A8291LLNLKGLAVRHHHHHT--EEaaaaaaxxbb
1cke_A_571cke   A6170VPLASHLDVRHHHHHT--EEaaaaaapxbb
1h8t_C_20431h8t   C20432052LMEIAEVDSVHHHHHTS-EEaaaaaaxxbx
1iw7_A_751iw7   A7988ILNLKELVVRHHHHHT--EEaaaaaaxbbb
1kkh_A_1821kkh   A185194EEFLKNCKFLHHHHHT--EEaaaaaaxbbb
1lop_A_1301lop   A133142VDKIKGVATGHHHHHTS-EEaaaaaaxxbb
1msw_D_3141msw   D320329INIAQNTAWKHHHHHT--EEaaaaaaxxbb
1nb8_A_3601nb8   A363372SFVDYVAVEQHHHHHT--EEaaaaaapxbb
1or8_A_2081or8   A210219KDVAIKEPLVHHHHHTS-EEaaaaaabpbb
3adk_*_23adk   -211EEKLKKSKIIHHHHHTS-EEaaaaaaxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1iw7_A_751iw7   A     MGMAGNESIUM ION K - 83
1iw7_A_751iw7   A     MGMAGNESIUM ION E - 84
1iw7_A_751iw7   A     MGMAGNESIUM ION L - 85
1iw7_A_751iw7   A     MGMAGNESIUM ION V - 86
1iw7_A_751iw7   A     MGMAGNESIUM ION V - 87
1iw7_A_751iw7   A     MGMAGNESIUM ION F - 89
1nb8_A_3601nb8   A     MSESELENOMETHIONINE Y - 367
1or8_A_2081or8   A     UNKUNKNOWN L - 218
1or8_A_2081or8   A     UNKUNKNOWN D - 220

Clusters included in this Subclass
CLUSTER: HE.2.111
CLUSTER: HE.2.59
CLUSTER: HE.3.103
CLUSTER: HE.4.113