Information on SUBCLASS 2.5.6 |
Subclass Accession number: 8253
Subclass: 2.5.6 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 14.8 +/- 32.0 Average RMSD (Å) : 0.750 +/- 0.300 Consensus geometry
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Consensus Sequence: | XpXXXX |
(φψ)-conformation: | aappbb |
Pattern: | x | [ADS] | [GKR] | [EY] | [AKL] | [gp] | [krt] | [cm] | [py] |
Conservation: | -0.544 | 0.760 | 0.836 | 1.966 | -0.729 | -0.159 | -1.275 | -0.518 | -0.336 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1afr_A_343 | 1afr | A | 344 | 352 | RAKEAPTMP | HHHT--EEE | aaaaxxxbx |
1gk8_A_77 | 1gk8 | A | 77 | 85 | LDRYKGRCY | HHHH--EEE | aaaaxxbxa |
1jr1_A_476 | 1jr1 | A | 484 | 492 | YSGELKFEK | HHS-S-EEE | aagaxbbbx |
1rbl_A_77 | 1rbl | A | 77 | 85 | MDRYKGKCY | HHHH--EEE | aaaaxxbxa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gk8_A_77 | 1gk8 | A | EGLETHYLENE GLYCOL | L - 77 |
1gk8_A_77 | 1gk8 | A | HYP4-HYDROXYPROLINE | D - 78 |
1gk8_A_77 | 1gk8 | A | HYP4-HYDROXYPROLINE | R - 79 |
1gk8_A_77 | 1gk8 | A | HYP4-HYDROXYPROLINE | Y - 80 |
1gk8_A_77 | 1gk8 | A | HYP4-HYDROXYPROLINE | K - 81 |
1gk8_A_77 | 1gk8 | A | HYP4-HYDROXYPROLINE | G - 82 |
1gk8_A_77 | 1gk8 | A | HYP4-HYDROXYPROLINE | R - 83 |
Clusters included in this Subclass |
CLUSTER: HE.3.112 |