Information on SUBCLASS 2.5.8 |
Subclass Accession number: 8255
Subclass: 2.5.8 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 8.8 +/- 9.4 Average RMSD (Å) : 0.833 +/- 0.115 Consensus geometry
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Consensus Sequence: | XcXXhp |
(φψ)-conformation: | aappbb |
Pattern: | [GVW] | x | x | x | [ADK] | [AMT] | x | [EK] | x | [LT] | x | [GK] | x | [DPR] | [ILV] | [KNT] | [NV] | [GLV] | [ITV] |
Conservation: | -0.591 | -0.957 | -1.566 | -0.591 | -0.347 | 0.018 | 0.233 | 2.332 | -0.835 | 0.852 | -0.713 | 0.964 | -0.713 | -0.225 | 1.724 | 0.506 | -0.006 | -0.957 | 0.871 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1lbv_A_44 | 1lbv | A | 48 | 66 | VAEDAALEILRKERVTVVT | HHHHHHHHHHTTSSEEEEE | aaaaaaaaaaaaxxbbxbb |
1mg5_A_17 | 1mg5 | A | 17 | 35 | GIGLDTSKELLKRDLKNLV | HHHHHHHHHHTTS--SEEE | aaaaaaaaaaaaxxxabbb |
4ubp_C_176 | 4ubp | C | 178 | 196 | WNIEKMLKSTEGLPINVGI | HHHHHHHHHHTT-SSEEEE | aaaaaaaaaaaabxbxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1mg5_A_17 | 1mg5 | A | NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE | G - 17 |
1mg5_A_17 | 1mg5 | A | NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE | I - 18 |
1mg5_A_17 | 1mg5 | A | NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE | G - 19 |
1mg5_A_17 | 1mg5 | A | NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE | L - 37 |
1mg5_A_17 | 1mg5 | A | NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE | D - 38 |
Clusters included in this Subclass |
CLUSTER: HE.5.306 |