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Information on SUBCLASS 3.2.8
Subclass Accession number: 8312
Subclass: 3.2.8 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 13.3 +/- 14.4
Average RMSD (Å) : 0.600 +/- 0.235

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: hXchpXh
(φψ)-conformation: aalpabb
Pattern: [afilpv][agilmt][CDEKNQW][cnrty][ailv]xxx[EGKNR][dpv][ADEK]x[AILMTV]xx
Conservation:-0.433-0.736-0.394-1.0841.144-0.766-0.220-0.6250.9591.8560.822-1.0551.184-1.2840.630
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dbt_A_671dbt   A7387AMKRLASLGVDLVNVHHHHHHTTT-SEEEEaaaaaaaavxabbbb
1dxe_A_301dxe   A3246STEVLGLAGFDWLVLHHHHHTTS--SEEEEaaaaaaaavxabbxx
1fmt_A_1221fmt   A122136PIQRSLWAGDAETGVHHHHHHHHT-SEEEEaaaaaaaavxabbeb
1fsg_A_1531fsg   A158172FGERLKAVGPKSMRIHHHHHHTT--SEEEEaaaaaaaavxabbbb
1gg4_A_1661gg4   A167181IAWTVSLTRPEAALVHHHHHHHH--SEEEEaaaaaaaalxabbbb
1hgx_A_1091hgx   A114128LLNNLQMRKPASLKVHHHHHHTT--SEEEEaaaaaaaavxabbbb
1j7j_A_1061j7j   A111125VREILGLREPKSLAIHHHHHHTT-BSEEEEaaaaaaaalxabbbb
1jp4_A_2011jp4   A203217VTDCIAAMNPDNVLRHHHHHHTT--SEEEEaaaaaaaalxabbbb
1lam_*_3351lam   -342356ALCYAHTFNPKVIINHHHHHHTT--SEEEEaaaaaaaalxabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dbt_A_671dbt   A     U5PURIDINE-5'-MONOPHOSPHATE T - 69
1dbt_A_671dbt   A     U5PURIDINE-5'-MONOPHOSPHATE N - 86
1dxe_A_301dxe   A     PO4PHOSPHATE ION D - 47
1fsg_A_1531fsg   A     PRPALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID F - 153
1fsg_A_1531fsg   A     MO2MAGNESIUM ION, 2 WATERS COORDINATED T - 154
1fsg_A_1531fsg   A     PRPALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID T - 154
1fsg_A_1531fsg   A     PRPALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID L - 155
1fsg_A_1531fsg   A     9DG9-DEAZAGUANINE K - 178
1gg4_A_1661gg4   A     MSESELENOMETHIONINE A - 179
1gg4_A_1661gg4   A     MSESELENOMETHIONINE L - 180
1gg4_A_1661gg4   A     MSESELENOMETHIONINE V - 181
1hgx_A_1091hgx   A     5GPGUANOSINE-5'-MONOPHOSPHATE L - 109
1hgx_A_1091hgx   A     5GPGUANOSINE-5'-MONOPHOSPHATE T - 110
1hgx_A_1091hgx   A     5GPGUANOSINE-5'-MONOPHOSPHATE M - 111
1hgx_A_1091hgx   A     5GPGUANOSINE-5'-MONOPHOSPHATE K - 134
1jp4_A_2011jp4   A     AMPADENOSINE MONOPHOSPHATE V - 218
1lam_*_3351lam   *     ZNZINC ION G - 335
1lam_*_3351lam   *     CO3CARBONATE ION G - 335
1lam_*_3351lam   *     CO3CARBONATE ION R - 336
1lam_*_3351lam   *     CO3CARBONATE ION L - 337
1lam_*_3351lam   *     MPD2-METHYL-2,4-PENTANEDIOL F - 349

Clusters included in this Subclass
CLUSTER: HE.4.106
CLUSTER: HE.5.111