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Information on SUBCLASS 3.3.4
Subclass Accession number: 8321
Subclass: 3.3.4 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 13.9 +/- 16.5
Average RMSD (Å) : 0.633 +/- 0.161

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: hXpXpXX
(φψ)-conformation: aapaabb
Pattern: [degqs]xxxx[acfly]x[DNS]x[dehkrt][afilpt][adeks]x
Conservation:0.103-0.727-0.607-0.292-0.7260.291-0.6092.902-0.073-0.089-0.6220.449-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1itk_A_6461itk   A646658DFFVNLLDMGTEWHHHHHHH-TTEEEaaaaaaaxaabbb
1j8u_A_3511j8u   A352364GELQYCLSEKPKLHHHHHHTSSSSEEaaaaaaaxaaxxb
1jfb_A_481jfb   A5061DVCFVATSEKLS.HHHHHHH-TTEE.aaaaaaaxaabb.
1jip_A_451jip   A4758EAKAALSDLRLS.HHHHHHH-TTEE.aaaaaaaxaaxx.
1l3s_A_3551l3s   A356368QFVAWLGDETKKKHHHHHHH-TTSEEaaaaaaaxaaxxb
1mlw_A_3381mlw   A339351SELKHALSGHAKVHHHHHHTSTTSEEaaaaaaaxaaxxb
1n40_A_481n40   A5061LCTQVLEDRRFS.HHHHHHT-TTEE.aaaaaaabaaxx.
1odz_A_3921odz   A395406DFQAFYADEFTA.HHHHHHHSTTEE.aaaaaaaxaaxb.
1q5d_A_551q5d   A5768DVSAVFRDERFA.HHHHHHT-TTEE.aaaaaaabaabx.
1r6x_A_201r6x   A2234ELLSEAQSSDILVHHHHHHT-TTSEEaaaaaaaxaaxxb
1toh_*_3971toh   -398410GELLHSLSEEPEVHHHHHHTSSSSEEaaaaaaaxaaxxb
1vdc_*_1841vdc   -186198MQQRALSNPKIDVHHHHHHT-TTEEEaaaaaaaxaabbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jfb_A_481jfb   A     GOLGLYCEROL V - 54
1jfb_A_481jfb   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 55
1jfb_A_481jfb   A     GOLGLYCEROL A - 55
1jfb_A_481jfb   A     GOLGLYCEROL T - 56
1jfb_A_481jfb   A     GOLGLYCEROL S - 57
1jfb_A_481jfb   A     GOLGLYCEROL E - 58
1jfb_A_481jfb   A     GOLGLYCEROL L - 60
1jfb_A_481jfb   A     GOLGLYCEROL S - 61
1jip_A_451jip   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 52
1jip_A_451jip   A     KTNCIS-1-ACETYL-4-(4-((2-(2,4-DICHLOROPHENYL)-2-(1H-IMIDAZOL-1-YLMETHYL)-1,3-DIOXOLAN-4-YL)METHOXY)PHENYL) PIPERAZINE S - 58
1n40_A_481n40   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 55
1n40_A_481n40   A     SULSULFATE ANION R - 58
1n40_A_481n40   A     SULSULFATE ANION F - 60
1n40_A_481n40   A     SULSULFATE ANION S - 61
1q5d_A_551q5d   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 62

Clusters included in this Subclass
CLUSTER: HE.3.78
CLUSTER: HE.4.71
CLUSTER: HE.5.140