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PDB code:

Information on SUBCLASS 3.4.1

Subclass Accession number: 8329 Subclass: 3.4.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 47 Average sequence ID (%) : 13.4 +/- 15.1 Average RMSD (Å) : 0.753 +/- 0.193 Consensus geometry d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a53_*_139	1a53	-	146	158	LEYARSYGMEPLI	HHHHHTTT---EE	aaaaaaavbbxxb
1a53_*_33	1a53	-	37	49	ILEFNKRNITAII	HHHHHHTT---EE	aaaaaaalbxxbb
1ayx_*_363	1ayx	-	377	389	AYDAKSASNDITI	HHHHHHHT--EEE	aaaaaaalxxbbb
1b3o_A_77	1b3o	A	79	91	AIAMALTGGIGFI	HHHHHHTT--BEE	aaaaaaagFbbbx
1b7y_B_606	1b7y	B	614	626	EALFARLGLAFRV	HHHHHHHT---EE	aaaaaaavbxbbb
1cfz_A_138	1cfz	A	146	158	LAALRESGVEAIP	HHHHHTTT---EE	aaaaaaavbbxbp
1cg2_A_330	1cg2	A	341	353	VAYYKEAGGTLGV	HHHHHHTT---EE	aaaaaaavbbbxb
1cv8_*_67	1cv8	-	71	83	IYFGQTQGRSPQL	HHHHHHTT---EE	aaaaaaavbbxbx
1e9y_B_228	1e9y	B	235	247	LDVADKYDVQVAI	HHHHHHTT-B-EE	aaaaaaalbxbbb
1egz_A_234	1egz	A	241	253	VTFMRDNNISNAN	HHHHHHTT--EEE	aaaaaaalbxbbx
1ejx_C_1226	1ejx	C	1233	1245	LTVADEMDIQVAL	HHHHHHHT-B-EE	aaaaaaalbxbbb
1ek6_A_47	1ek6	A	50	62	RRVQELTGRSVEF	HHHHHHHT---EE	aaaaaaavbxbxb
1eq2_B_184	1eq2	B	188	200	LNTQLNNGESPKL	HHHHHHTTS--EE	aaaaaaavxxwbb
1evl_A_431	1evl	A	442	454	AVALEENNIPFEY	HHHHHHTT---EE	aaaaaaalbwbbx
1ffr_A_331	1ffr	A	347	359	DQLSVETGRKYEL	HHHHHHHS---EE	aaaaaaavxxbbb
1fw1_A_15	1fw1	A	21	33	RIALALKGIDYKT	HHHHHHTT---EE	aaaaaaavxxbxb
1geh_A_202	1geh	A	214	226	DKVENETGEKKTW	HHHHHHT-S--EE	aaaaaaavxxbbb
1gum_A_17	1gum	A	20	32	RWVLAAAGVEFDE	HHHHHHTT---EE	aaaaaaavbxbbb
1gvf_A_28	1gvf	A	35	47	LEVCSEMRSPVIL	HHHHHHHT---EE	aaaaaaalbwbbb
1gvf_A_59	1gvf	A	67	79	SAYSTTYNMPLAL	HHHHHHTTS-BEE	aaaaaaalbxbxx
1hlg_A_16	1hlg	A	17	29	SQMITYWGYPNEE	HHHHHHTT---EE	aaaaaaavbxbbb
1i24_A_54	1i24	A	59	71	SRWKALTGKSIEL	HHHHHHH----EE	aaaaaaavxbxxb
1j9b_A_14	1j9b	A	19	31	LEMIRNSGTEPTI	HHHHHHTT---EE	aaaaaaavbxxxb
1jsc_A_560	1jsc	A	560	572	LSSAVQAGTPVKI	HHHHHHHT---EE	aaaaaaavxwxbx
1k3y_A_17	1k3y	A	20	32	RWLLAAAGVEFEE	HHHHHHHT---EE	aaaaaaavxxbbb
1kep_A_201	1kep	A	205	217	QITNILAGIKPKL	HHHHHHHT---EE	aaaaaaavbxxbb
1kht_A_16	1kht	A	24	36	MDNLRKEGVNYKM	HHHHHTTT---EE	aaaaaaNgxbxxx
1ki9_A_16	1ki9	A	24	36	MEKLSEEGINYKM	HHHHHTTT---EE	aaaaaaagxbxbx
1kw3_B_69	1kw3	B	76	88	ADKLRQAGVAFTR	HHHHHHHT---EE	aaaaaaavxxbbx
1l1y_A_624	1l1y	A	627	639	VYQAYLRGEAPVL	HHHHHHTT---EE	aaaaaaavbxxbb
1lgt_A_70	1lgt	A	77	89	ADKLKQAGIAVTT	HHHHHHTT---EE	aaaaaaavxxbbx
1llf_A_136	1llf	A	139	151	VTKSVLMGKPIIH	HHHHHHTT---EE	aaaaaaavbxbbx
1lpp_*_136	1lpp	-	139	151	ITKSIAMGKPIIH	HHHHHHTT---EE	aaaaaaavbwbbx
1mpy_A_75	1mpy	A	82	94	ERDLMAYGCAVEQ	HHHHHHHT---EE	aaaaaaagxxxbb
1ny1_A_81	1ny1	A	85	97	LDVLKKHRVTGTF	HHHHHHTT---EE	aaaaaaalbxbbb
1ozh_A_224	1ozh	A	228	240	RRLLETSHIPVTS	HHHHHHH---EEE	aaaaaaalxpbbb
1p4d_A_193	1p4d	A	205	217	KEQVEALGYETEV	HHHHHHTT---EE	aaaaaaagxbbbx
1pkl_A_57	1pkl	A	68	80	RQAAAELGVNIAI	HHHHHHTT---EE	aaaaaaavbbbxb
1rlv_A_63	1rlv	A	70	82	YEDLRDRGNKVKI	HHHHHHTT---EE	aaaaaaavxbxbx
1tml_*_47	1tml	-	58	70	MSAAQAAGKIPIL	HHHHHHHT-B-EE	aaaaaaavbbxbb
1v39_*_73	1v39	-	79	91	RDHFYNLGVIIKW	HHHHHHTT---EE	aaaaaaavxxbbb
1vsr_A_26	1vsr	A	29	41	ASLLTGQGLAFRV	HHHHHHTT---EE	aaaaaaavxxbbb
1wht_B_314	1wht	B	317	329	YRELIAAGLRIWV	HHHHHHTT---EE	aaaaaaavxxbbb
1xla_A_150	1xla	A	165	177	AGYIKDKGYNLRI	HHHHHHHT---EE	aaaaaaavxxbbx
4ubp_C_229	4ubp	C	236	248	LTVADEADVQVAI	HHHHHHHT-B-EE	aaaaaaavbxbbb
6mht_A_131	6mht	A	137	149	KNTMNELDYSFHA	HHHHHHTTB--EE	aaaaaaavbxbbb
7a3h_A_242	7a3h	A	249	261	IDFMDERNLSWAN	HHHHHHTT--EEE	aaaaaaalxxbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a53_*_33	1a53	*	IGPINDOLE-3-GLYCEROL PHOSPHATE	E - 51
1a53_*_139	1a53	*	IGPINDOLE-3-GLYCEROL PHOSPHATE	E - 159
1ayx_*_363	1ayx	*	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	L - 364
1cv8_*_67	1cv8	*	E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE	P - 67
1cv8_*_67	1cv8	*	E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE	E - 69
1cv8_*_67	1cv8	*	E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE	M - 70
1e9y_B_228	1e9y	B	KCXLYSINE NZ-CARBOXYLIC ACID	Q - 244
1e9y_B_228	1e9y	B	KCXLYSINE NZ-CARBOXYLIC ACID	V - 245
1e9y_B_228	1e9y	B	KCXLYSINE NZ-CARBOXYLIC ACID	A - 246
1e9y_B_228	1e9y	B	KCXLYSINE NZ-CARBOXYLIC ACID	I - 247
1ejx_C_1226	1ejx	C	KCXLYSINE NZ-CARBOXYLIC ACID	Q - 1242
1ejx_C_1226	1ejx	C	KCXLYSINE NZ-CARBOXYLIC ACID	V - 1243
1ejx_C_1226	1ejx	C	KCXLYSINE NZ-CARBOXYLIC ACID	A - 1244
1ejx_C_1226	1ejx	C	KCXLYSINE NZ-CARBOXYLIC ACID	L - 1245
1eq2_B_184	1eq2	B	ADQADENOSINE-5'-DIPHOSPHATE-GLUCOSE	V - 184
1eq2_B_184	1eq2	B	ADQADENOSINE-5'-DIPHOSPHATE-GLUCOSE	H - 187
1eq2_B_184	1eq2	B	ADQADENOSINE-5'-DIPHOSPHATE-GLUCOSE	K - 199
1eq2_B_184	1eq2	B	ADQADENOSINE-5'-DIPHOSPHATE-GLUCOSE	L - 200
1eq2_B_184	1eq2	B	ADQADENOSINE-5'-DIPHOSPHATE-GLUCOSE	F - 201
1ffr_A_331	1ffr	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 362
1ffr_A_331	1ffr	A	NAGN-ACETYL-D-GLUCOSAMINE	I - 363
1ffr_A_331	1ffr	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 364
1fw1_A_15	1fw1	A	GSHGLUTHATHIONE	S - 15
1fw1_A_15	1fw1	A	GSHGLUTHATHIONE	C - 16
1fw1_A_15	1fw1	A	GSHGLUTHATHIONE	S - 17
1fw1_A_15	1fw1	A	GSHGLUTHATHIONE	R - 19
1gvf_A_28	1gvf	A	EGLETHYLENE GLYCOL	Q - 32
1gvf_A_28	1gvf	A	EGLETHYLENE GLYCOL	E - 36
1gvf_A_28	1gvf	A	EGLETHYLENE GLYCOL	S - 43
1gvf_A_28	1gvf	A	EGLETHYLENE GLYCOL	P - 44
1gvf_A_28	1gvf	A	EGLETHYLENE GLYCOL	V - 45
1gvf_A_28	1gvf	A	EGLETHYLENE GLYCOL	I - 46
1gvf_A_28	1gvf	A	EGLETHYLENE GLYCOL	L - 47
1gvf_A_59	1gvf	A	EGLETHYLENE GLYCOL	Y - 63
1gvf_A_59	1gvf	A	EGLETHYLENE GLYCOL	S - 67
1gvf_A_59	1gvf	A	EGLETHYLENE GLYCOL	S - 70
1gvf_A_59	1gvf	A	EGLETHYLENE GLYCOL	T - 71
1gvf_A_59	1gvf	A	EGLETHYLENE GLYCOL	Y - 73
1gvf_A_59	1gvf	A	EGLETHYLENE GLYCOL	N - 74
1gvf_A_59	1gvf	A	EGLETHYLENE GLYCOL	M - 75
1gvf_A_59	1gvf	A	EGLETHYLENE GLYCOL	P - 76
1gvf_A_59	1gvf	A	EGLETHYLENE GLYCOL	L - 77
1gvf_A_59	1gvf	A	EGLETHYLENE GLYCOL	A - 78
1gvf_A_59	1gvf	A	EGLETHYLENE GLYCOL	L - 79
1gvf_A_59	1gvf	A	PGCO-PHOSPHOGLYCOLOHYDROXAMATE	D - 82
1gvf_A_59	1gvf	A	ZNZINC ION	D - 82
1gvf_A_59	1gvf	A	PGCO-PHOSPHOGLYCOLOHYDROXAMATE	H - 83
1gvf_A_59	1gvf	A	ZNZINC ION	H - 83
1hlg_A_16	1hlg	A	NAGN-ACETYL-D-GLUCOSAMINE	I - 16
1hlg_A_16	1hlg	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 17
1hlg_A_16	1hlg	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 18
1hlg_A_16	1hlg	A	NAGN-ACETYL-D-GLUCOSAMINE	Y - 22
1hlg_A_16	1hlg	A	NAGN-ACETYL-D-GLUCOSAMINE	W - 23
1hlg_A_16	1hlg	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 29
1j9b_A_14	1j9b	A	CZZTHIARSAHYDROXY-CYSTEINE	T - 14
1j9b_A_14	1j9b	A	TASTRIHYDROXYARSENITE(III)	T - 14
1j9b_A_14	1j9b	A	CZZTHIARSAHYDROXY-CYSTEINE	S - 15
1j9b_A_14	1j9b	A	TASTRIHYDROXYARSENITE(III)	S - 15
1j9b_A_14	1j9b	A	CZZTHIARSAHYDROXY-CYSTEINE	R - 16
1j9b_A_14	1j9b	A	TASTRIHYDROXYARSENITE(III)	R - 16
1j9b_A_14	1j9b	A	CZZTHIARSAHYDROXY-CYSTEINE	N - 17
1jsc_A_560	1jsc	A	MGMAGNESIUM ION	L - 575
1jsc_A_560	1jsc	A	TPPTHIAMINE DIPHOSPHATE	L - 575
1jsc_A_560	1jsc	A	MGMAGNESIUM ION	N - 576
1k3y_A_17	1k3y	A	GOLGLYCEROL	S - 18
1ny1_A_81	1ny1	A	MSESELENOMETHIONINE	T - 81
1ny1_A_81	1ny1	A	MSESELENOMETHIONINE	L - 85
1ny1_A_81	1ny1	A	MSESELENOMETHIONINE	F - 97
1ny1_A_81	1ny1	A	MSESELENOMETHIONINE	V - 99
1ozh_A_224	1ozh	A	PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL	S - 224
1ozh_A_224	1ozh	A	PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL	L - 227
1ozh_A_224	1ozh	A	PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL	R - 228
1ozh_A_224	1ozh	A	PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL	R - 229
1ozh_A_224	1ozh	A	PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL	L - 231
1ozh_A_224	1ozh	A	PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL	E - 232
1ozh_A_224	1ozh	A	PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL	H - 235
1p4d_A_193	1p4d	A	EGLETHYLENE GLYCOL	K - 203
1p4d_A_193	1p4d	A	EGLETHYLENE GLYCOL	E - 206
1p4d_A_193	1p4d	A	EGLETHYLENE GLYCOL	Q - 207
1p4d_A_193	1p4d	A	EGLETHYLENE GLYCOL	V - 208
1p4d_A_193	1p4d	A	EGLETHYLENE GLYCOL	A - 210
1p4d_A_193	1p4d	A	EGLETHYLENE GLYCOL	L - 211
1v39_*_73	1v39	*	SAHS-ADENOSYL-L-HOMOCYSTEINE	T - 73
1v39_*_73	1v39	*	SAHS-ADENOSYL-L-HOMOCYSTEINE	H - 74
1v39_*_73	1v39	*	SAHS-ADENOSYL-L-HOMOCYSTEINE	I - 75
1v39_*_73	1v39	*	SAHS-ADENOSYL-L-HOMOCYSTEINE	I - 94
1v39_*_73	1v39	*	SAHS-ADENOSYL-L-HOMOCYSTEINE	D - 95
4ubp_C_229	4ubp	C	KCXLYSINE NZ-CARBOXYLIC ACID	S - 235
4ubp_C_229	4ubp	C	KCXLYSINE NZ-CARBOXYLIC ACID	Q - 245
4ubp_C_229	4ubp	C	KCXLYSINE NZ-CARBOXYLIC ACID	V - 246
4ubp_C_229	4ubp	C	KCXLYSINE NZ-CARBOXYLIC ACID	A - 247
4ubp_C_229	4ubp	C	KCXLYSINE NZ-CARBOXYLIC ACID	I - 248

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gvf_A_59	1gvf	A	AC1PGC BINDING SITE FOR CHAIN A	D - 82
1gvf_A_59	1gvf	A	AC1PGC BINDING SITE FOR CHAIN A	H - 83
1pkl_A_57	1pkl	A	MONMONOVALENT CATION BINDING SITE, BY ANALOGY WITH OTHER CRYSTAL STRUCTURES	D - 83

Clusters included in this Subclass

CLUSTER: HE.3.47

CLUSTER: HE.4.27

CLUSTER: HE.5.13

CLUSTER: HE.6.7

CLUSTER: HE.7.58

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