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PDB code:

Information on SUBCLASS 3.5.2

Subclass Accession number: 8340 Subclass: 3.5.2 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 27 Average sequence ID (%) : 12.7 +/- 14.5 Average RMSD (Å) : 0.837 +/- 0.256 Consensus geometry d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ad1_A_186	1ad1	A	186	198	LDELVATEYPVLL	HHHHHTT-S-BEE	aaaaaaavxwbbb
1auk_*_197	1auk	-	209	221	MADAQRQDRPFFL	HHHHHHTT--EEE	aaaaaaalbxbbx
1b7b_A_136	1b7b	A	139	151	AKEAMQAGAIFKE	HHHHHTTT--EEE	aaaaaaagbbbbx
1byb_*_326	1byb	-	329	341	ARMLSRHHAILNF	HHHHHHTT-EEEE	aaaaaaalxxxxx
1duv_G_110	1duv	G	114	126	ETLAEYASVPVWN	HHHHHHHSS-EEE	aaaaaaavbpbbx
1eix_A_47	1eix	A	58	70	VRELQQRGFDIFL	HHHHHHTT--EEE	aaaaaaavxxbbx
1em8_A_20	1em8	A	29	41	AAERWRSGKRVLI	HHHHHHTT--EEE	aaaaaaavxxbbb
1eye_A_196	1eye	A	196	208	LPELVATGIPVLV	HHHHHTTSS-BEE	aaaaaaavbpbbb
1f52_A_189	1f52	A	196	208	CLVMEQMGLVVEA	HHHHHHTT--EEE	aaaaaaavxbxab
1fa2_A_361	1fa2	A	369	381	LSSGWKEYIDVAG	HHHHHHTT--EEE	aaaaaaalbxbbb
1fbt_A_57	1fbt	A	59	71	IQTAEALGVPYEQ	HHHHHTTSS--EE	aaaaaaagxwbbb
1g0o_A_64	1g0o	A	71	83	VAAIKKNGSDAAC	HHHHHHTT--EEE	aaaaaaagbxbbb
1gnl_A_291	1gnl	A	292	304	KEEFESFNGPVLL	HHHHHHH-S-EEE	aaaaaaagxxbbx
1gnt_A_295	1gnt	A	296	308	NPEFESFNGPILL	HHHHHHH-S-EEE	aaaaaaagxpbbx
1gtz_A_33	1gtz	A	41	53	VKAAAAHGGTVDF	HHHHHTTT--EEE	aaaaaaavbbbbb
1i58_A_365	1i58	A	370	382	RDLAKKMNKEVNF	HHHHHHTT--EEE	aaaaaaalbbbxx
1isi_A_210	1isi	A	215	227	EKRLKDMGFQYSC	HHHHHHTT--EEE	aaaaaaavxxbbb
1j6u_A_89	1j6u	A	94	106	RDTLKREKKEEFA	HHHHHHH---EEE	aaaaaaalbxbbb
1jg1_A_104	1jg1	A	107	119	ALISEIVKTDVYT	HHHHHHH-S-EEE	aaaaaaavbpbbb
1jke_A_99	1jke	A	110	122	VERCRQQEMNTQT	HHHHHHTT--EEE	aaaaaaavxxbbb
1js1_X_125	1js1	X	128	140	NQFIQHSGRPVFS	HHHHHHSSS-EEE	aaaaaaavbwbbx
1jsc_A_473	1jsc	A	481	493	SKVANDTGRHVIV	HHHHHHT-S-EEE	aaaaaaavxxbbb
1k87_A_410	1k87	A	418	430	IDLATRSRRRLMI	HHHHHHTTS-EEE	aaaaaaalbbxxb
1m7y_A_175	1m7y	A	182	194	YQEAEKRNLRVKG	HHHHHHTT--EEE	aaaaaaavbxxae
1now_A_429	1now	A	433	445	LSRVTASGFPVIL	HHHHHHTT--EEE	aaaaaaavxxbbb
1nqk_A_127	1nqk	A	138	150	VWRRLLQRETVDF	HHHHHTTT--EEE	aaaaaaavxxbbb
1o20_A_126	1o20	A	132	144	TILALKSGNTILL	HHHHHHTT--EEE	aaaaaaavbxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1auk_*_197	1auk	*	NAGN-ACETYL-D-GLUCOSAMINE	F - 204
1auk_*_197	1auk	*	NAGN-ACETYL-D-GLUCOSAMINE	D - 207
1auk_*_197	1auk	*	NAGN-ACETYL-D-GLUCOSAMINE	D - 211
1auk_*_197	1auk	*	NAGN-ACETYL-D-GLUCOSAMINE	Q - 215
1auk_*_197	1auk	*	NAGN-ACETYL-D-GLUCOSAMINE	R - 217
1byb_*_326	1byb	*	GLCGLUCOSE	F - 341
1eix_A_47	1eix	A	BMQ1-(5'-PHOSPHO-BETA-D-RIBOFURANOSYL)BARBITURIC ACID	F - 69
1eix_A_47	1eix	A	BMQ1-(5'-PHOSPHO-BETA-D-RIBOFURANOSYL)BARBITURIC ACID	D - 71
1eix_A_47	1eix	A	BMQ1-(5'-PHOSPHO-BETA-D-RIBOFURANOSYL)BARBITURIC ACID	K - 73
1eye_A_196	1eye	A	PMMPTERIN-6-YL-METHYL-MONOPHOSPHATE	L - 207
1eye_A_196	1eye	A	PMMPTERIN-6-YL-METHYL-MONOPHOSPHATE	V - 208
1f52_A_189	1f52	A	MPD2-METHYL-2,4-PENTANEDIOL	Q - 189
1f52_A_189	1f52	A	MPD2-METHYL-2,4-PENTANEDIOL	D - 190
1f52_A_189	1f52	A	MPD2-METHYL-2,4-PENTANEDIOL	I - 191
1f52_A_189	1f52	A	MPD2-METHYL-2,4-PENTANEDIOL	R - 192
1f52_A_189	1f52	A	MPD2-METHYL-2,4-PENTANEDIOL	S - 193
1f52_A_189	1f52	A	MPD2-METHYL-2,4-PENTANEDIOL	E - 194
1f52_A_189	1f52	A	ADPADENOSINE-5'-DIPHOSPHATE	E - 207
1f52_A_189	1f52	A	ADPADENOSINE-5'-DIPHOSPHATE	A - 208
1f52_A_189	1f52	A	MPD2-METHYL-2,4-PENTANEDIOL	H - 209
1f52_A_189	1f52	A	MNMANGANESE (II) ION	H - 210
1fa2_A_361	1fa2	A	DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE	E - 382
1fbt_A_57	1fbt	A	MSESELENOMETHIONINE	R - 57
1fbt_A_57	1fbt	A	PO4PHOSPHATE ION	R - 57
1fbt_A_57	1fbt	A	MSESELENOMETHIONINE	T - 58
1fbt_A_57	1fbt	A	MSESELENOMETHIONINE	I - 59
1fbt_A_57	1fbt	A	MSESELENOMETHIONINE	Q - 60
1fbt_A_57	1fbt	A	MSESELENOMETHIONINE	Q - 71
1g0o_A_64	1g0o	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	T - 64
1j6u_A_89	1j6u	A	MSESELENOMETHIONINE	R - 89
1j6u_A_89	1j6u	A	MSESELENOMETHIONINE	Y - 92
1jg1_A_104	1jg1	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	W - 104
1jg1_A_104	1jg1	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	N - 105
1jg1_A_104	1jg1	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	A - 106
1jg1_A_104	1jg1	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	I - 120
1jg1_A_104	1jg1	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	E - 121
1jke_A_99	1jke	A	ZNZINC ION	E - 103
1jke_A_99	1jke	A	ZNZINC ION	A - 104
1jke_A_99	1jke	A	ZNZINC ION	D - 107
1jke_A_99	1jke	A	ZNZINC ION	E - 111
1jke_A_99	1jke	A	ZNZINC ION	R - 114
1jke_A_99	1jke	A	ZNZINC ION	Q - 115
1k87_A_410	1k87	A	FADFLAVIN-ADENINE DINUCLEOTIDE	R - 431
1k87_A_410	1k87	A	LACLACTIC ACID	R - 431
1k87_A_410	1k87	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 433
1m7y_A_175	1m7y	A	PPG4-(2-AMINO-ETHOXY)-2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-BUT-3-ENOIC ACID	T - 198
1o20_A_126	1o20	A	MSESELENOMETHIONINE	N - 126
1o20_A_126	1o20	A	MSESELENOMETHIONINE	V - 129
1o20_A_126	1o20	A	MSESELENOMETHIONINE	E - 130
1o20_A_126	1o20	A	MSESELENOMETHIONINE	I - 133
1o20_A_126	1o20	A	MSESELENOMETHIONINE	L - 143
1o20_A_126	1o20	A	MSESELENOMETHIONINE	L - 144
1o20_A_126	1o20	A	MSESELENOMETHIONINE	R - 145

Clusters included in this Subclass

CLUSTER: HE.4.26

CLUSTER: HE.5.22

CLUSTER: HE.7.118

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