Information on SUBCLASS 3.6.4 |
Subclass Accession number: 8347
Subclass: 3.6.4 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 12.3 +/- 12.8 Average RMSD (Å) : 1.000 +/- 0.265 Consensus geometry
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Consensus Sequence: | ppphpVX |
(φψ)-conformation: | aabaabb |
Pattern: | [ELM] | x | x | [EST] | x | [IMV] | x | [EQR] | x | x | [ER] | [DNQ] | [HRY] | [GP] | [DS] | [V] | x | [IL] | x |
Conservation: | -0.538 | -1.062 | -1.324 | -0.014 | -0.800 | 0.772 | -0.713 | 0.597 | -0.713 | -1.237 | 0.913 | 0.423 | 0.510 | 0.966 | 1.154 | 1.908 | -1.062 | 1.195 | -0.975 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a05_A_195 | 1a05 | A | 199 | 217 | LWREVVTEVARDYPDVRLS | HHHHHHHHHGGG-TTSEEE | aaaaaaaaaaaabaabxxb |
1e6u_A_14 | 1e6u | A | 14 | 32 | MVGSAIRRQLEQRGDVELV | HHHHHHHHHHTT-TTEEEE | aaaaaaaaaaaabaabbxb |
1jz7_A_433 | 1jz7 | A | 438 | 456 | ERVTRMVQRDRNHPSVIIW | HHHHHHHHHHTT-TTEEEE | aaaaaaaaaaaaxaaxabb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1e6u_A_14 | 1e6u | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | M - 14 |
1e6u_A_14 | 1e6u | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | V - 15 |
1e6u_A_14 | 1e6u | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | G - 16 |
1e6u_A_14 | 1e6u | A | TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | S - 17 |
1e6u_A_14 | 1e6u | A | TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | R - 20 |
1e6u_A_14 | 1e6u | A | TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | R - 21 |
1jz7_A_433 | 1jz7 | A | DMSDIMETHYL SULFOXIDE | R - 448 |
1jz7_A_433 | 1jz7 | A | DMSDIMETHYL SULFOXIDE | N - 449 |
1jz7_A_433 | 1jz7 | A | DMSDIMETHYL SULFOXIDE | H - 450 |
1jz7_A_433 | 1jz7 | A | DMSDIMETHYL SULFOXIDE | P - 451 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1e6u_A_14 | 1e6u | A | AC1NAP BINDING SITE FOR CHAIN A | M - 14 |
Clusters included in this Subclass |
CLUSTER: HE.6.227 |