ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.16.1

Subclass Accession number: 8377
Subclass: 3.16.1

PSSM

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 10

Average sequence ID (%) : 18.6 +/- 20.0
Average RMSD (Å) : 0.690 +/- 0.145

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	XhccphX
(φψ)-conformation:	aallabb

Pattern:	x	[adegkn]	[agiklv]	[ILV]	x	x	[iltvy]	x	x	x	[ALMTV]	[DGKNQS]	[fg]	[knqrt]	x	[apst]	[ILV]	[fikl]
Conservation:	-0.933	-0.408	-0.805	1.781	-0.611	-0.920	-0.285	-0.695	-0.742	-0.869	0.198	0.601	1.695	0.157	-0.452	0.376	2.295	-0.384

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dhp_A_53	1dhp	A	57	74	ADVVMMTLDLADGRIPVI	HHHHHHHHHHHTTSS-EE	aaaaaaaaaaalvabxbb
1e43_A_267	1e43	A	267	284	AGKLENYLNKTSFNQSVF	HHHHHHHHHHTTT-SEEE	aaaaaaaaaaallabxbx
1f76_A_272	1f76	A	276	293	TEIIRRLSLELNGRLPII	HHHHHHHHHHHTTSS-EE	aaaaaaaaaaalvabpbb
1gox_*_265	1gox	-	266	283	IMALEEVVKAAQGRIPVF	HHHHHHHHHHTTTSS-EE	aaaaaaaaaaalvabwbb
1hvx_A_270	1hvx	A	270	287	INKLHNYIMKTNGTMSLF	HHHHHHHHHHTTT-SEEE	aaaaaaaaaaallabxbx
1j93_A_127	1j93	A	130	147	GEALTILRKEVNNQAAVL	HHHHHHHHHHHTTSSEEE	aaaaaaaaaaallabbxb
1mzh_A_262	1mzh	A	262	279	LEEVRLIKSSAKGRIKVK	HHHHHHHHHHHTTSSEEE	aaaaaaaaaaalvabxbb
1o5k_A_52	1o5k	A	56	73	EKLVSRTLEIVDGKIPVI	HHHHHHHHHHHTTSS-EE	aaaaaaaaaaalvabxbb
1qlm_A_46	1qlm	A	47	64	EAGLLFSEVCMGGLATVE	HHHHHHHHHHTTT-EEEE	aaaaaaaaaaavvabbbb
1vjs_*_267	1vjs	-	267	284	LGALENYLNKTNFNHSVF	HHHHHHHHHHTTT-SEEE	aaaaaaaaaaavvabxbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1f76_A_272	1f76	A	MSESELENOMETHIONINE	P - 291
1f76_A_272	1f76	A	MSESELENOMETHIONINE	I - 293
1f76_A_272	1f76	A	FMNFLAVIN MONONUCLEOTIDE	V - 295
1gox_*_265	1gox	*	FMNFLAVIN MONONUCLEOTIDE	D - 285
1o5k_A_52	1o5k	A	CACALCIUM ION	R - 61
1o5k_A_52	1o5k	A	CACALCIUM ION	L - 63
1o5k_A_52	1o5k	A	CACALCIUM ION	E - 64
1o5k_A_52	1o5k	A	CACALCIUM ION	I - 65
1o5k_A_52	1o5k	A	CACALCIUM ION	V - 66
1o5k_A_52	1o5k	A	CACALCIUM ION	D - 67
1qlm_A_46	1qlm	A	PO4PHOSPHATE ION	L - 60

Clusters included in this Subclass

CLUSTER: HE.4.162

CLUSTER: HE.4.215

CLUSTER: HE.5.80