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Information on SUBCLASS 3.28.1
Subclass Accession number: 8395
Subclass: 3.28.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 8.3 +/- 11.7
Average RMSD (Å) : 0.743 +/- 0.151

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXXXcXX
(φψ)-conformation: aabplbb
Pattern: xx[acftv][aefl]xx[fikmv][DEHPQS][GKNR][aciltv][klmtv][FLPW]
Conservation:-0.740-0.984-0.519-0.1840.141-0.914-0.0480.9362.6620.342-0.392-0.300
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bag_*_2831bag   -290301WAVIASRSGSTPHHHHTTSSS-EEaaaaaaxbgxxx
1e8g_A_3611e8g   A372383KDAFSAIPGVKFHHHHTTSTT-EEaaaaaaxxvxbb
1kag_A_471kag   A6778INELTEKQGIVLHHHHHTSSSEEEaaaaaaxbvbbb
1kws_A_891kws   A97108SQTLSLVPRLHWHHHHTTSSSEEEaaaaaabxlbbx
1m1n_B_711m1n   B7687VLCALGFEKTMPHHHHTTBTTEEEaaaaaabxlbxw
1mio_B_251mio   B2940MYAALGIHNCLPHHHHTTBTTEEEaaaaaabxlbbp
1pb1_A_3911pb1   A391402YDFERLMDGAKLHHHHTTSSS-EEaaaaaabbvxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1kws_A_891kws   A     UGAURIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID V - 111
1kws_A_891kws   A     UGAURIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID E - 112
1m1n_B_711m1n   B     CLFFE(8)-S(7) CLUSTER Q - 71
1m1n_B_711m1n   B     CLFFE(8)-S(7) CLUSTER P - 72
1mio_B_251mio   B     CLPFE-S CLUSTER P - 25

Clusters included in this Subclass
CLUSTER: HE.5.113
CLUSTER: HE.6.124