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Information on SUBCLASS 4.1.4
Subclass Accession number: 8409
Subclass: 4.1.4 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 14.5 +/- 16.6
Average RMSD (Å) : 0.773 +/- 0.245

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: pXXPphXh
(φψ)-conformation: aabaapbb
Pattern: x[aikmtv][himv]x[ADENQT][ailvw][fklv][AEKQR]xx[lp][DGKNQRST][acpvy]x[FILPVY][afilmtv][FGLVY]
Conservation:-1.185-0.501-0.103-0.6740.171-0.461-0.3661.434-0.905-0.7693.1010.019-0.139-0.3720.4660.1480.137
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1auo_A_311auo   A3248PVAEALQESLLTTRFVLHHHHHHHTT-TTEEEEEaaaaaaaaaxaabxbbx
1cza_N_8711cza   N874890IMHQTVKELSPKCNVSFHHHHHHHHHSTTEEEEEaaaaaaaaabaabbbbb
1f3t_A_451f3t   A5066RKHETWKKCLPRVTPFYHHHHHHHHH-TTEEEEEaaaaaaaaabaabxwbp
1i0z_A_1101i0z   A119135FIIPQIVKYSPDCIIIVHHHHHHHHH-TT-EEEEaaaaaaaaabaaxbbbx
1i7q_B_371i7q   B3854EVIIERLQHMEQPVLMLHHHHHHHHH-SSEEEEEaaaaaaaaaxaapbxbb
1lld_A_931lld   A106122AIMPNLVKVAPNAIYMLHHHHHHHHH-TTSEEEEaaaaaaaaabaaxxbbb
1m6y_A_371m6y   A3753GHSRAILEHCPGCRIIGHHHHHHHHH-TT-EEEEaaaaaaaaabaaxbbbb
1mg5_A_431mg5   A4460AAIAELKAINPKVTVTFHHHHHHHHH-TTSEEEEaaaaaaaaabaaxxbbb
1tib_*_1111tib   -126142QKVEDAVREHPDYRVVFHHHHHHHHH-TTSEEEEaaaaaaaaabaaxxbbb
3tgl_*_1093tgl   -124140ATVLDQFKQYPSYKVAVHHHHHHHHH-TTSEEEEaaaaaaaaabaaxxbbb
9ldt_A_1139ldt   A122138FIIPNIVKYSPNCKLLVHHHHHHHHH-TT-EEEEaaaaaaaaabaaxbxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f3t_A_451f3t   A     PLPPYRIDOXAL-5'-PHOSPHATE A - 67
1i0z_A_1101i0z   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE N - 113
1i0z_A_1101i0z   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 116
1i0z_A_1101i0z   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE I - 120
1i0z_A_1101i0z   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 135
1lld_A_931lld   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 103
1lld_A_931lld   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 106
1lld_A_931lld   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 107
1m6y_A_371m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE G - 37
1m6y_A_371m6y   A     MSESELENOMETHIONINE H - 38
1m6y_A_371m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE H - 38
1m6y_A_371m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE S - 39
1m6y_A_371m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 54
1m6y_A_371m6y   A     MSESELENOMETHIONINE D - 55
1m6y_A_371m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 55
9ldt_A_1139ldt   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 116
9ldt_A_1139ldt   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 119
9ldt_A_1139ldt   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 122
9ldt_A_1139ldt   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 123
9ldt_A_1139ldt   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 138

Clusters included in this Subclass
CLUSTER: HE.3.54
CLUSTER: HE.4.50