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Information on SUBCLASS 4.1.7
Subclass Accession number: 8412
Subclass: 4.1.7 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 18.2 +/- 22.4
Average RMSD (Å) : 1.340 +/- 0.152

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: XppPphpV
(φψ)-conformation: aabaapbb
Pattern: [dnt][ilt]x[AGQ][AKTV][LMV]x[ADKST][aci][ALV]x[el][DEHS][P][DKNT][ACLY][AEKR][IV][AGKV][CFIL][it]x
Conservation:-0.495-0.337-0.837-0.155-0.3710.825-0.490-0.412-0.5070.126-0.8030.1020.2593.728-0.084-0.3100.1501.538-0.679-0.040-0.372-0.837
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bdg_*_2091bdg   -209230DTVGTLASCALEDPKCAVGLIVHHHHHHHHHHTT-TTEEEEEEEaaaaaaaaaaaabaaxabbxbb
1clx_A_2231clx   A225246NIRQAMQKIVALSPTLKIKITEHHHHHHHHHHTT-SS-EEEEEEaaaaaaaaaaaabaapxbbxaa
1cza_N_6571cza   N657678DTVGTMMTCAYEEPTCEVGLIVHHHHHHHHHHTT-TTEEEEEEEaaaaaaaaaaaabaaxabbbbb
1qm4_A_311qm4   A3859ISDAVLDAHLKQDPNAKVACETHHHHHHHHHHTT-TT-EEEEEEaaaaaaaaaaaabaapbbbbbb
1tib_*_1111tib   -123144TLRQKVEDAVREHPDYRVVFTGHHHHHHHHHHHH-TTSEEEEEEaaaaaaaaaaaabaaxxbbbbe
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bdg_*_2091bdg   *     GLCGLUCOSE D - 209
1bdg_*_2091bdg   *     GLCGLUCOSE T - 210
1bdg_*_2091bdg   *     GLCGLUCOSE I - 229
1cza_N_6571cza   N     GLCGLUCOSE D - 657
1cza_N_6571cza   N     G6PALPHA-D-GLUCOSE-6-PHOSPHATE D - 657
1cza_N_6571cza   N     GLCGLUCOSE T - 658
1cza_N_6571cza   N     G6PALPHA-D-GLUCOSE-6-PHOSPHATE T - 661
1cza_N_6571cza   N     GLCGLUCOSE I - 677
1cza_N_6571cza   N     G6PALPHA-D-GLUCOSE-6-PHOSPHATE I - 677
1cza_N_6571cza   N     G6PALPHA-D-GLUCOSE-6-PHOSPHATE V - 678
1qm4_A_311qm4   A     AMBL-2-AMINO-4-METHOXY-CIS-BUT-3-ENOIC ACID P - 31
1qm4_A_311qm4   A     MGMAGNESIUM ION P - 31
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1clx_A_2231clx   A CATTWO CATALYTIC RESIDUES ACID-BASE GLU 127 NUCLEOPHILE GLU 246.E - 246

Clusters included in this Subclass
CLUSTER: HE.5.143