Information on SUBCLASS 4.1.7 |
Subclass Accession number: 8412
Subclass: 4.1.7 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 18.2 +/- 22.4 Average RMSD (Å) : 1.340 +/- 0.152 Consensus geometry
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Consensus Sequence: | XppPphpV |
(φψ)-conformation: | aabaapbb |
Pattern: | [dnt] | [ilt] | x | [AGQ] | [AKTV] | [LMV] | x | [ADKST] | [aci] | [ALV] | x | [el] | [DEHS] | [P] | [DKNT] | [ACLY] | [AEKR] | [IV] | [AGKV] | [CFIL] | [it] | x |
Conservation: | -0.495 | -0.337 | -0.837 | -0.155 | -0.371 | 0.825 | -0.490 | -0.412 | -0.507 | 0.126 | -0.803 | 0.102 | 0.259 | 3.728 | -0.084 | -0.310 | 0.150 | 1.538 | -0.679 | -0.040 | -0.372 | -0.837 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bdg_*_209 | 1bdg | - | 209 | 230 | DTVGTLASCALEDPKCAVGLIV | HHHHHHHHHHTT-TTEEEEEEE | aaaaaaaaaaaabaaxabbxbb |
1clx_A_223 | 1clx | A | 225 | 246 | NIRQAMQKIVALSPTLKIKITE | HHHHHHHHHHTT-SS-EEEEEE | aaaaaaaaaaaabaapxbbxaa |
1cza_N_657 | 1cza | N | 657 | 678 | DTVGTMMTCAYEEPTCEVGLIV | HHHHHHHHHHTT-TTEEEEEEE | aaaaaaaaaaaabaaxabbbbb |
1qm4_A_31 | 1qm4 | A | 38 | 59 | ISDAVLDAHLKQDPNAKVACET | HHHHHHHHHHTT-TT-EEEEEE | aaaaaaaaaaaabaapbbbbbb |
1tib_*_111 | 1tib | - | 123 | 144 | TLRQKVEDAVREHPDYRVVFTG | HHHHHHHHHHHH-TTSEEEEEE | aaaaaaaaaaaabaaxxbbbbe |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bdg_*_209 | 1bdg | * | GLCGLUCOSE | D - 209 |
1bdg_*_209 | 1bdg | * | GLCGLUCOSE | T - 210 |
1bdg_*_209 | 1bdg | * | GLCGLUCOSE | I - 229 |
1cza_N_657 | 1cza | N | GLCGLUCOSE | D - 657 |
1cza_N_657 | 1cza | N | G6PALPHA-D-GLUCOSE-6-PHOSPHATE | D - 657 |
1cza_N_657 | 1cza | N | GLCGLUCOSE | T - 658 |
1cza_N_657 | 1cza | N | G6PALPHA-D-GLUCOSE-6-PHOSPHATE | T - 661 |
1cza_N_657 | 1cza | N | GLCGLUCOSE | I - 677 |
1cza_N_657 | 1cza | N | G6PALPHA-D-GLUCOSE-6-PHOSPHATE | I - 677 |
1cza_N_657 | 1cza | N | G6PALPHA-D-GLUCOSE-6-PHOSPHATE | V - 678 |
1qm4_A_31 | 1qm4 | A | AMBL-2-AMINO-4-METHOXY-CIS-BUT-3-ENOIC ACID | P - 31 |
1qm4_A_31 | 1qm4 | A | MGMAGNESIUM ION | P - 31 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1clx_A_223 | 1clx | A | CATTWO CATALYTIC RESIDUES ACID-BASE GLU 127 NUCLEOPHILE GLU 246. | E - 246 |
Clusters included in this Subclass |
CLUSTER: HE.5.143 |