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PDB code:

Information on SUBCLASS 4.2.2

Subclass Accession number: 8418 Subclass: 4.2.2 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 23 Average sequence ID (%) : 19.5 +/- 22.2 Average RMSD (Å) : 0.930 +/- 0.299 Consensus geometry d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ah4_*_137	1ah4	-	143	158	AMEELVDEGLVKAIGV	HHHHHHHHTSBS-EEE	aaaaaaaavababbbb
1am5_*_136	1am5	-	136	151	VFDNMGSQSLVEKDLF	HHHHHHHTT-SSSSEE	aaaaaaaalababxbb
1chr_A_143	1chr	A	149	164	SAVEMIERRRHNRFKV	HHHHHHHTT---EEEE	aaaaaaaalabFbbbb
1dpj_A_136	1dpj	A	136	151	PFYNAIQQDLLDEKRF	HHHHHHHTT--SSSEE	aaaaaaaalabababb
1eag_A_140	1eag	A	140	155	VPVTLKKQGVIAKNAY	HHHHHHHTTSSSSSEE	aaaaaaaavababxbb
1fs0_G_147	1fs0	G	155	170	VMLQAYDEGRLDKLYI	HHHHHHHTTS-S-EEE	aaaaaaaavababbbb
1hqt_A_140	1hqt	A	146	161	ALEALVAKGLVRALGL	HHHHHHHTTSBS-EEE	aaaaaaaavababbbb
1htr_B_136	1htr	B	136	151	AMQGMVQEGALTSPVF	HHHHHHHTT-SSSSEE	aaaaaaaavababxbb
1i1q_A_242	1i1q	A	251	264	QLQKAIRAGEIFQV..	HHHHHHHTTS-SEE..	aaaaaaaavababb..
1j71_A_141	1j71	A	141	156	VPVTLKKQGIINKNAY	HHHHHHHTTS-SSSEE	aaaaaaaavababxbb
1lf2_A_139	1lf2	A	139	154	IVVELKNQNKIENALF	HHHHHHHTTSSSSSEE	aaaaaaaavababxbb
1lya_B_150	1lya	B	150	165	VFDNLMQQKLVDQNIF	HHHHHHHTT-SSSSEE	aaaaaaaalababxbb
1mpp_*_136	1mpp	-	136	151	VHVNLYKQGLISSPVF	HHHHHHHTTSSSSSEE	aaaaaaaavababxbb
1muc_A_147	1muc	A	153	168	EARHMLEIRRHRVFKL	HHHHHHHTTS-SEEEE	aaaaaaaalababbbb
1o94_A_303	1o94	A	305	320	KMIEIVTKGYADIIGC	HHHHHHHTTS-SBEEE	aaaaaaaavababxxb
1pdz_*_326	1pdz	-	328	343	RITTAVEKKACKCLLL	HHHHHHHTT--SEEEE	aaaaaaaalababbxx
1qrp_E_136	1qrp	E	136	151	VFDNIWNQGLVSQDLF	HHHHHHHTT--SSSEE	aaaaaaaavabababb
1rne_*_136	1rne	-	136	151	IFDNIISQGVLKEDVF	HHHHHHHT--SSSSEE	aaaaaaaalNxabxbb
1ur3_M_136	1ur3	M	142	157	AFKHLHQSGKVRHFGV	HHHHHHHTTSB--EEE	aaaaaaaavababbbb
2apr_*_139	2apr	-	139	154	PMDNLISQGLISRPIF	HHHHHHHTTS-SSSEE	aaaaaaaavabababb
2asi_*_154	2asi	-	154	169	VHVNLYKQGLISSPLF	HHHHHHHTTSSSSSEE	aaaaaaaavababxbb
3cms_*_136	3cms	-	136	151	VFDNMMNRHLVAQDLF	HHHHHHHTT-SSSSEE	aaaaaaaalabababb
4pep_*_136	4pep	-	136	151	VFDNLWDQGLVSQDLF	HHHHHHHTT-SSSSEE	aaaaaaaalabababb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ah4_*_137	1ah4	*	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	V - 158
1ah4_*_137	1ah4	*	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	S - 159
1chr_A_143	1chr	A	MNMANGANESE (II) ION	K - 163
1chr_A_143	1chr	A	MNMANGANESE (II) ION	K - 165
1dpj_A_136	1dpj	A	MANALPHA-D-MANNOSE	Y - 138
1dpj_A_136	1dpj	A	MANALPHA-D-MANNOSE	N - 139
1dpj_A_136	1dpj	A	MANALPHA-D-MANNOSE	I - 141
1dpj_A_136	1dpj	A	MANALPHA-D-MANNOSE	Q - 142
1dpj_A_136	1dpj	A	MANALPHA-D-MANNOSE	Q - 143
1dpj_A_136	1dpj	A	MANALPHA-D-MANNOSE	K - 149
1hqt_A_140	1hqt	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	S - 162
1j71_A_141	1j71	A	EOHETHANOL	I - 150
1j71_A_141	1j71	A	EOHETHANOL	K - 153
1j71_A_141	1j71	A	EOHETHANOL	A - 155
1muc_A_147	1muc	A	MNMANGANESE (II) ION	K - 167
1o94_A_303	1o94	A	FMNFLAVIN MONONUCLEOTIDE	G - 319
1o94_A_303	1o94	A	FMNFLAVIN MONONUCLEOTIDE	C - 320
1pdz_*_326	1pdz	*	PGA2-PHOSPHOGLYCOLIC ACID	L - 342
1pdz_*_326	1pdz	*	MNMANGANESE (II) ION	L - 342
1ur3_M_136	1ur3	M	MSESELENOMETHIONINE	A - 136
1ur3_M_136	1ur3	M	MSESELENOMETHIONINE	V - 139
2asi_*_154	2asi	*	NAGN-ACETYL-D-GLUCOSAMINE	Y - 172

Clusters included in this Subclass

CLUSTER: HE.5.129

CLUSTER: HE.6.6

CLUSTER: HE.7.4

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