Information on SUBCLASS 4.5.2 |
Subclass Accession number: 8437
Subclass: 4.5.2 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 15.9 +/- 26.7 Average RMSD (Å) : 0.900 +/- 0.167 Consensus geometry
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Consensus Sequence: | XppXpXXh |
(φψ)-conformation: | aapaapbb |
Pattern: | x | x | [adeq] | x | [ckv] | [kprs] | [dnsy] | x | [knrs] | x | x | [gilv] | [cglv] |
Conservation: | -0.617 | -0.573 | 1.683 | -0.733 | -0.381 | 0.999 | 0.323 | -0.068 | 1.819 | -0.288 | -1.520 | 0.293 | -0.937 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dnp_A_17 | 1dnp | A | 19 | 31 | LAAACRNSSARVL | HHHHSSSTTSEEE | aaaaaaxaaxxbb |
1jy1_A_232 | 1jy1 | A | 239 | 251 | HAQAKPYENISLC | HHHHTT-TTEEEE | aaaaaabaabbbb |
1o9l_A_426 | 1o9l | A | 426 | 438 | AMDLVSSAKTKVV | HHHHT--SSSEEE | aaaaaaxaaxxxb |
1o9l_B_426 | 1o9l | B | 426 | 438 | AMDLVSSAKTKVV | HHHHT--TTSEEE | aaaaaaxaabxbb |
1oya_*_330 | 1oya | - | 333 | 345 | VREEVKDKRTLIG | HHHHTTSTTEEEE | aaaaaaxaabbbx |
2hvm_*_240 | 2hvm | - | 240 | 252 | LPEIKKSPKYGGV | HHHHTTSTTEEEE | aaaaaaxaapaeb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1o9l_B_426 | 1o9l | B | EMT2-(ETHYLMERCURI-THIO)-BENZOIC ACID | M - 427 |
1o9l_A_426 | 1o9l | A | EMCETHYL MERCURY ION | V - 430 |
1o9l_B_426 | 1o9l | B | EMT2-(ETHYLMERCURI-THIO)-BENZOIC ACID | V - 430 |
1o9l_A_426 | 1o9l | A | EMCETHYL MERCURY ION | S - 431 |
1o9l_A_426 | 1o9l | A | EMCETHYL MERCURY ION | S - 432 |
1o9l_A_426 | 1o9l | A | EMCETHYL MERCURY ION | A - 433 |
1o9l_B_426 | 1o9l | B | EMT2-(ETHYLMERCURI-THIO)-BENZOIC ACID | V - 439 |
1oya_*_330 | 1oya | * | FMNFLAVIN MONONUCLEOTIDE | G - 345 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1o9l_A_426 | 1o9l | A | AC1EMC BINDING SITE FOR CHAIN A | A - 433 |
Clusters included in this Subclass |
CLUSTER: HE.5.92 |