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Information on SUBCLASS 4.5.3
Subclass Accession number: 8438
Subclass: 4.5.3 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 7.2 +/- 10.1
Average RMSD (Å) : 0.867 +/- 0.151

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: hXpXpXXX
(φψ)-conformation: aapaapbb
Pattern: xxx[AFGLMV][AEGNS][dehkn][eps][eks]x[fltvy][IKLTV]x
Conservation:-0.624-1.097-0.507-0.7591.522-0.2851.8291.038-0.420-0.7590.061-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cs1_A_3081cs1   A313323RFLGGLSLFTL.HHHHT-SSSEE.aaaaaxNabxx.
1eqg_A_1391eqg   A139150WESFSNVSYYTRHHHHH-TTB-EEaaaaaxaaxxxb
1h7e_A_1311h7e   A131142AAEAAEPSTVKVHHHHT-TTS-EEaaaaaxaabxxb
2kfn_A_3982kfn   A406417KPLLEDEKALKVHHHHT-TTS-EEaaaaaxaaxxbb
2nap_A_4262nap   A430441HKAMSHPESFIVHHHHT-TT-EEEaaaaapaaxbbb
3thi_A_3323thi   A337347AQIVNKPSNRV.HHHHT-TT-EE.aaaaaxaapbx.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1eqg_A_1391eqg   A     NAGN-ACETYL-D-GLUCOSAMINE E - 140
1eqg_A_1391eqg   A     NAGN-ACETYL-D-GLUCOSAMINE N - 144
1eqg_A_1391eqg   A     NAGN-ACETYL-D-GLUCOSAMINE S - 146
1eqg_A_1391eqg   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 147
1eqg_A_1391eqg   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 148
2nap_A_4262nap   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE C - 442
2nap_A_4262nap   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE I - 443

Clusters included in this Subclass
CLUSTER: HE.5.158
CLUSTER: HE.6.114