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Information on SUBCLASS 4.5.5
Subclass Accession number: 8440
Subclass: 4.5.5 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 13.3 +/- 13.6
Average RMSD (Å) : 0.800 +/- 0.300

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XpphXhXh
(φψ)-conformation: aapaapbb
Pattern: [EPT][AL][AKV]xx[LV]x[KQ][DR][LP]x[FGM][AEN][AL]x
Conservation:-0.1780.400-0.695-0.954-0.9541.481-0.1782.1200.9900.803-0.824-0.954-0.4360.461-1.083
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ivy_A_1521ivy   A158172TLAVLVMQDPSMNLQHHHHHHTT-TTS-EEaaaaaaaabaaxxxa
1kae_A_2121kae   A216230EAKRQVSQRLDGAAIHHHHHHHH-TTS-EEaaaaaaaaxaabbxb
1vgv_A_181vgv   A1832PLVHALAKDPFFEAKHHHHHHHHSTT--EEaaaaaaaaxaaxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1kae_A_2121kae   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 212
1kae_A_2121kae   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 213
1kae_A_2121kae   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 214
1kae_A_2121kae   A     MSESELENOMETHIONINE K - 218
1kae_A_2121kae   A     MSESELENOMETHIONINE I - 230
1vgv_A_181vgv   A     MSESELENOMETHIONINE P - 18
1vgv_A_181vgv   A     MSESELENOMETHIONINE L - 19
1vgv_A_181vgv   A     MSESELENOMETHIONINE V - 20
1vgv_A_181vgv   A     MSESELENOMETHIONINE H - 21
1vgv_A_181vgv   A     MSESELENOMETHIONINE F - 28
1vgv_A_181vgv   A     MSESELENOMETHIONINE F - 29
1vgv_A_181vgv   A     MSESELENOMETHIONINE E - 30
1vgv_A_181vgv   A     MSESELENOMETHIONINE A - 31

Clusters included in this Subclass
CLUSTER: HE.6.259