Information on SUBCLASS 4.5.6 |
Subclass Accession number: 8441
Subclass: 4.5.6 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0003676 (>50 %) GO:0003677 (>50 %) |
Number of loops: 3 Average sequence ID (%) : 7.8 +/- 8.8 Average RMSD (Å) : 1.100 +/- 0.400 Consensus geometry
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Consensus Sequence: | XXXXXhXh |
(φψ)-conformation: | aapaapbb |
Pattern: | x | x | x | [EHP] | [AFV] | x | [AKR] | [AK] | x | [KPR] | x | [FV] | x | [ACI] | x | x | [CFY] |
Conservation: | -1.347 | -0.678 | 0.505 | 0.679 | -0.334 | -1.009 | 0.679 | 1.153 | -1.009 | 0.848 | -0.334 | 1.331 | -0.165 | 0.511 | -1.009 | -1.516 | 1.693 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dnp_A_107 | 1dnp | A | 112 | 128 | RDVEVERALRNVVCEGF | HHHHHHHH-TTSEEEEE | aaaaaaaaxaabxbbxb |
1mu2_A_156 | 1mu2 | A | 167 | 183 | VLEPFRKANKDVIIIQY | HHHHHHHH-TTSEEEEE | aaaaaaaabaaxxbbbb |
1vgv_A_18 | 1vgv | A | 18 | 34 | PLVHALAKDPFFEAKVC | HHHHHHHHSTT--EEEE | aaaaaaaaxaaxbbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1dnp_A_107 | 1dnp | A | MHF5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID | V - 107 |
1dnp_A_107 | 1dnp | A | MHF5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID | N - 108 |
1dnp_A_107 | 1dnp | A | MHF5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID | E - 109 |
1mu2_A_156 | 1mu2 | A | GOLGLYCEROL | I - 179 |
1mu2_A_156 | 1mu2 | A | GOLGLYCEROL | I - 181 |
1vgv_A_18 | 1vgv | A | MSESELENOMETHIONINE | P - 18 |
1vgv_A_18 | 1vgv | A | MSESELENOMETHIONINE | L - 19 |
1vgv_A_18 | 1vgv | A | MSESELENOMETHIONINE | V - 20 |
1vgv_A_18 | 1vgv | A | MSESELENOMETHIONINE | H - 21 |
1vgv_A_18 | 1vgv | A | MSESELENOMETHIONINE | F - 28 |
1vgv_A_18 | 1vgv | A | MSESELENOMETHIONINE | F - 29 |
1vgv_A_18 | 1vgv | A | MSESELENOMETHIONINE | E - 30 |
1vgv_A_18 | 1vgv | A | MSESELENOMETHIONINE | A - 31 |
Clusters included in this Subclass |
CLUSTER: HE.5.286 |