ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.7.2

Subclass Accession number: 8444
Subclass: 4.7.2

PSSM

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 8

Average sequence ID (%) : 20.0 +/- 22.8
Average RMSD (Å) : 1.275 +/- 0.205

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	XXXXXhXh
(φψ)-conformation:	aababpbb

Pattern:	[aflvy]	[FILV]	[der]	[enrst]	[AILV]	[KR]	[ANPQS]	x	[flt]	[ADS]	x	[AIPV]	x	[afi]	[ailtv]
Conservation:	-0.642	1.011	0.215	-0.338	0.402	2.940	-0.249	-1.105	-0.561	0.538	-0.727	0.270	-0.525	-0.818	-0.412

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bxo_A_140	1bxo	A	140	154	FFDTVKSSLAQPLFA	HHHHHGGGBSSSEEE	aaaaaaaaxabxbbb
1e4e_A_190	1e4e	A	193	207	AIESARQYDSKILIE	HHHHHTTT-SSEEEE	aaaaaaaababbbbb
1g63_A_18	1g63	A	21	35	YIVELKQHFDEVNIL	HHHHHTTTSS-EEEE	aaaaaaaababbbbb
1ibq_A_139	1ibq	A	139	153	FFDTVKSQLDSPLFA	HHHHHGGGSSSSEEE	aaaaaaaaxabxbbb
1oew_A_143	1oew	A	143	157	FFDNAKASLDSPVFT	HHHHHTTTSSSSEEE	aaaaaaaaxabxbbb
1rpx_C_57	1rpx	C	59	73	VVDSLRPITDLPLDV	HHHHHGGG--S-EEE	aaaaaaaabaxxxxb
1ujp_A_191	1ujp	A	193	207	LVRRIKARTALPVAV	HHHHHHTT--S-EEE	aaaaaaaabaxxbbb
1zpd_A_123	1zpd	A	124	138	QLEMAKNITAAAEAI	HHHHHGGG-S-EEEE	aaaaaaaababbbxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bxo_A_140	1bxo	A	MANALPHA-D-MANNOSE	A - 149
1bxo_A_140	1bxo	A	MANALPHA-D-MANNOSE	Q - 150
1e4e_A_190	1e4e	A	GOLGLYCEROL	E - 195
1e4e_A_190	1e4e	A	GOLGLYCEROL	S - 196
1e4e_A_190	1e4e	A	GOLGLYCEROL	R - 198
1e4e_A_190	1e4e	A	GOLGLYCEROL	Q - 199
1e4e_A_190	1e4e	A	ADPADENOSINE-5'-DIPHOSPHATE	E - 207
1e4e_A_190	1e4e	A	ADPADENOSINE-5'-DIPHOSPHATE	Q - 208
1ibq_A_139	1ibq	A	ZNZINC ION	Q - 146
1ibq_A_139	1ibq	A	ZNZINC ION	L - 147
1ibq_A_139	1ibq	A	ZNZINC ION	D - 148
1ujp_A_191	1ujp	A	CITCITRIC ACID	V - 207
1ujp_A_191	1ujp	A	CITCITRIC ACID	G - 208

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1e4e_A_190	1e4e	A	AC3ADP BINDING SITE FOR CHAIN A	Q - 208

Clusters included in this Subclass

CLUSTER: HE.7.11