ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.25.1

Subclass Accession number: 8486
Subclass: 4.25.1

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 7

Average sequence ID (%) : 47.6 +/- 25.0
Average RMSD (Å) : 0.457 +/- 0.113

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	XphXGpGW
(φψ)-conformation:	aappepeb

Pattern:	[F]	[ADE]	[DKNR]	[FM]	[KR]	[AEKQ]	x	[F]	[NST]	[ADEQT]	[AST]	[AG]	x	[GKNST]	[ailv]	x	[G]	[STV]	[G]	[W]	[ATV]	[ivw]	[L]	[avy]	[KSWY]
Conservation:	1.276	-0.281	-0.470	0.339	0.450	-0.549	-0.488	1.276	-0.203	-0.708	-0.243	-0.042	-0.937	-0.685	-0.860	-1.008	1.276	-0.458	1.276	3.203	-0.426	-0.886	0.506	-0.739	-0.619

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b06_A_116	1b06	A	116	140	FDRFKQVFSESANSLPGSGWTVLYY	HHHHHHHHHHHHHH--SSEEEEEEE	aaaaaaaaaaaaaapxexebbbbxb
1bsm_A_107	1bsm	A	107	131	FDNMKAQFTAAATGIQGSGWASLVW	HHHHHHHHHHHHH--SSSEEEEEEE	aaaaaaaaaaaaaapxexebbbbbb
1isa_A_103	1isa	A	103	127	FADFKAQFTDAAIKNFGSGWTWLVK	HHHHHHHHHHHHHH--SSEEEEEEE	aaaaaaaaaaaaaaxxexebbbxbb
1ma1_A_112	1ma1	A	112	136	FERFRKEFSQAAISAEGSGWAVLTY	HHHHHHHHHHHHHT-SSSEEEEEEE	aaaaaaaaaaaaaapxexebbbxbb
1p7g_A_122	1p7g	A	122	146	FEKFKEEFSQAAKNVEGVGWAILVY	HHHHHHHHHHHHHT-SSSEEEEEEE	aaaaaaaaaaaaaaxxexebbbbbb
1qnn_A_104	1qnn	A	104	128	FEKFKEEFNTAGTTLFGSGWVWLAS	HHHHHHHHHHHHHHS-SSEEEEEEE	aaaaaaaaaaaaaaxxexebbbbbb
1sss_A_116	1sss	A	116	140	FDRFKQVFTETANSLPGTGWAVLYY	HHHHHHHHHHHHHH--SSEEEEEEE	aaaaaaaaaaaaaapxexebbbbxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1b06_A_116	1b06	A	OF1FERROUS ION, 1 WATER COORDINATED	G - 134
1b06_A_116	1b06	A	OF1FERROUS ION, 1 WATER COORDINATED	W - 135
1bsm_A_107	1bsm	A	FEFE (III) ION	W - 126
1isa_A_103	1isa	A	FE2FE (II) ION	W - 122
1ma1_A_112	1ma1	A	OF1FERROUS ION, 1 WATER COORDINATED	W - 131
1qnn_A_104	1qnn	A	FEFE (III) ION	W - 123

Clusters included in this Subclass