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Information on SUBCLASS 10.8.1
Subclass Accession number: 851
Subclass: 10.8.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0003677 (>75 %)  GO:0003700 (>75 %)  GO:0005515 (>75 %)  GO:0005529 (>75 %)  GO:0030246 (>75 %)  
SCOP : 50352 (>75 %)  50370 (>75 %)  50371 (>75 %)  81279 (>75 %)  81296 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 25.9 +/- 17.7
Average RMSD (Å) : 0.333 +/- 0.058

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: DhXcpXXXcGpXhX
(φψ)-conformation: bppllpappgppbb
Pattern: [CTV][LV][D][AV]x[DGN][DNS][DGQ][FIT]x[DN][G][NT]x[IV]x[LV][DWY]
Conservation:-0.5310.1302.281-0.133-1.234-0.250-0.109-0.742-0.882-0.4080.8052.2810.259-1.0230.723-0.7750.138-0.531
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1knm_A_1001knm   A100117CLDAVGNGTANGTLIQLYEEEEGGG--STT-BEEEExpbxpvlxaxpvpxbbxb
1m2t_B_2681m2t   B268285TVDVRDDDFHDGNQIQLWEEEEGGG--STT-BEEEEbxbxpllbappgxxxbxb
1qxm_A_2531qxm   A254271VLDVYNSQIANGTHVIVDEEEEGGG--STT-BEEEEbxbxpllxappgpxbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1knm_A_1001knm   A     LATLACTOSE D - 102
1knm_A_1001knm   A     LATLACTOSE A - 103
1knm_A_1001knm   A     LATLACTOSE V - 104
1knm_A_1001knm   A     LATLACTOSE G - 105
1knm_A_1001knm   A     LATLACTOSE N - 106
1knm_A_1001knm   A     LATLACTOSE Q - 115
1knm_A_1001knm   A     LATLACTOSE Y - 117
1m2t_B_2681m2t   B     GOLGLYCEROL D - 270
1m2t_B_2681m2t   B     GOLGLYCEROL V - 271
1m2t_B_2681m2t   B     GOLGLYCEROL R - 272
1m2t_B_2681m2t   B     GOLGLYCEROL D - 273
1m2t_B_2681m2t   B     NAGN-ACETYL-D-GLUCOSAMINE D - 274
1m2t_B_2681m2t   B     GOLGLYCEROL D - 274
1m2t_B_2681m2t   B     NAGN-ACETYL-D-GLUCOSAMINE D - 275
1m2t_B_2681m2t   B     NAGN-ACETYL-D-GLUCOSAMINE F - 276
1m2t_B_2681m2t   B     GOLGLYCEROL Q - 283
1m2t_B_2681m2t   B     GOLGLYCEROL W - 285

Clusters included in this Subclass
CLUSTER: HA.9.18