ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.55.1

Subclass Accession number: 8529
Subclass: 4.55.1

PSSM

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 16.9 +/- 26.9
Average RMSD (Å) : 0.960 +/- 0.207

Consensus geometry

d (Å): 9

delta (°): 0-45

theta (°): 90-135

rho (°): 90-135

Consensus Sequence:	phXhXpXX
(φψ)-conformation:	aappaabb

Pattern:	[iy]	[aiy]	[QRTY]	[adeq]	[FHV]	[AEKT]	[ADEQ]	x	x	[LPT]	[kp]	[DHN]	[TVW]	[atv]	[IMTV]	[AILY]
Conservation:	-0.686	-1.467	-0.520	-0.080	-0.107	-0.220	0.621	-1.234	-0.765	0.532	0.787	2.598	0.633	-0.703	0.942	-0.330

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1c9k_A_42	1c9k	A	42	57	RIQHHKDGRPAHWRTA	HHHHHHHTS-TTEEEE	aaaaaaaabpaabxbb
1gnl_A_407	1gnl	A	408	423	YYTDFAEGLPKDTVIL	HHHHHHHHS-TTEEEE	aaaaaaaaxxaabbxb
1gnt_A_414	1gnt	A	415	430	YYTEVAENLPKDTVIL	HHHHHHHHS-TTEEEE	aaaaaaaaxpaabbxb
1qjw_A_239	1qjw	A	246	261	INYAVTQLNLPNVAMY	HHHHHHHT--TTEEEE	aaaaaaaaxbaabbbb
1zpd_A_367	1zpd	A	370	385	IARQVEALLTPNTTVI	HHHHHHHT--TTEEEE	aaaaaaaaxbaaxbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1c9k_A_42	1c9k	A	5GPGUANOSINE-5'-MONOPHOSPHATE	R - 42
1c9k_A_42	1c9k	A	5GPGUANOSINE-5'-MONOPHOSPHATE	I - 43
1c9k_A_42	1c9k	A	5GPGUANOSINE-5'-MONOPHOSPHATE	H - 46
1c9k_A_42	1c9k	A	5GPGUANOSINE-5'-MONOPHOSPHATE	K - 47
1c9k_A_42	1c9k	A	5GPGUANOSINE-5'-MONOPHOSPHATE	R - 50
1c9k_A_42	1c9k	A	5GPGUANOSINE-5'-MONOPHOSPHATE	T - 56
1qjw_A_239	1qjw	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 239
1qjw_A_239	1qjw	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 240
1qjw_A_239	1qjw	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 243
1qjw_A_239	1qjw	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 244
1qjw_A_239	1qjw	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 247

Clusters included in this Subclass

CLUSTER: HE.5.105