Information on SUBCLASS 4.56.1 |
Subclass Accession number: 8530
Subclass: 4.56.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 18.2 +/- 21.5 Average RMSD (Å) : 0.800 +/- 0.235 Consensus geometry
|
Consensus Sequence: | XAphcXhh |
(φψ)-conformation: | aalalpbb |
Pattern: | x | [ASTV] | x | x | [AITV] | x | [AD] | x | x | x | [dehn] | [LTV] | [GKQ] | x | x | [CLV] | [FIPTV] |
Conservation: | -0.545 | 0.308 | -1.261 | -1.261 | 0.694 | -0.890 | 1.369 | -0.538 | -0.492 | 1.621 | 0.195 | 1.002 | 0.961 | -1.251 | 0.112 | 1.124 | -1.146 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a05_A_13 | 1a05 | A | 22 | 38 | QVLDAVDQAAHLGLRCT | HHHHHHHHHHT---EEE | aaaaaaaaaavavxbbb |
1hkv_A_120 | 1hkv | A | 120 | 136 | VSELTAAVKAGVGHIVV | HHHHHHHHHHT---EEE | aaaaaaaaaavavbbxx |
1o6z_A_248 | 1o6z | A | 254 | 270 | VAHMVEAILHDTGEVLP | HHHHHHHHHTT---EEE | aaaaaaaaaalavxxbx |
1trb_*_15 | 1trb | - | 18 | 34 | YTAAVYAARANLQPVLI | HHHHHHHHTTT---EEE | aaaaaaaaaavalxbbx |
1vdc_*_15 | 1vdc | - | 18 | 34 | HTAAIYAARAELKPLLF | HHHHHHHHHTT---EEE | aaaaaaaaaavalxbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1o6z_A_248 | 1o6z | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | P - 250 |
1trb_*_15 | 1trb | * | FADFLAVIN-ADENINE DINUCLEOTIDE | P - 15 |
1trb_*_15 | 1trb | * | FADFLAVIN-ADENINE DINUCLEOTIDE | A - 16 |
1trb_*_15 | 1trb | * | FADFLAVIN-ADENINE DINUCLEOTIDE | G - 17 |
1trb_*_15 | 1trb | * | FADFLAVIN-ADENINE DINUCLEOTIDE | I - 34 |
1vdc_*_15 | 1vdc | * | FADFLAVIN-ADENINE DINUCLEOTIDE | A - 17 |
1vdc_*_15 | 1vdc | * | FADFLAVIN-ADENINE DINUCLEOTIDE | F - 34 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1o6z_A_248 | 1o6z | A | AC2CL BINDING SITE FOR CHAIN A | R - 252 |
1o6z_A_248 | 1o6z | A | AC2CL BINDING SITE FOR CHAIN A | H - 256 |
1vdc_*_15 | 1vdc | * | FADFAD BINDING SITE. | P - 15 |
1vdc_*_15 | 1vdc | * | FADFAD BINDING SITE. | A - 16 |
Clusters included in this Subclass |
CLUSTER: HE.4.284 |
CLUSTER: HE.5.221 |