Information on SUBCLASS 4.62.1 |
Subclass Accession number: 8536
Subclass: 4.62.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 25.0 +/- 20.3 Average RMSD (Å) : 0.725 +/- 0.263 Consensus geometry
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Consensus Sequence: | XXcLGXXh |
(φψ)-conformation: | aalaepbb |
Pattern: | [EFMY] | [AIVY] | [AG] | [GKS] | x | x | [AK] | x | x | x | [ALV] | [AQR] | x | [EGN] | [L] | [G] | [DPR] | x | [LV] | [ILY] |
Conservation: | -0.660 | -0.565 | 0.609 | -0.230 | -0.734 | -0.565 | 0.258 | -0.516 | -1.323 | -0.425 | -0.261 | -0.341 | -0.225 | -0.088 | 1.759 | 3.276 | -0.462 | -0.169 | 0.621 | 0.041 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ati_A_411 | 1ati | A | 415 | 434 | EYAKRLKARLLALGLGRVLY | HHHHHHHHHHHTT-SS-EEE | aaaaaaaaaaaaavaepbbx |
1ldg_*_30 | 1ldg | - | 30 | 49 | MIGGVMATLIVQKNLGDVVL | HHHHHHHHHHHHTT--EEEE | aaaaaaaaaaaaalaexbbx |
1qs0_A_279 | 1qs0 | A | 283 | 302 | YAASRWAAERARRGLGPSLI | HHHHHHHHHHHHTTS--EEE | aaaaaaaaaaaaavaewbbb |
1ur5_A_12 | 1ur5 | A | 12 | 31 | FVGSTTAHWLAAKELGDIVL | HHHHHHHHHHHHTT-SEEEE | aaaaaaaaaaaaalaexbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ldg_*_30 | 1ldg | * | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | M - 30 |
1ldg_*_30 | 1ldg | * | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | I - 31 |
1ldg_*_30 | 1ldg | * | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | G - 32 |
1qs0_A_279 | 1qs0 | A | MSESELENOMETHIONINE | F - 279 |
1ur5_A_12 | 1ur5 | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | F - 12 |
1ur5_A_12 | 1ur5 | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | V - 13 |
1ur5_A_12 | 1ur5 | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | G - 14 |
1ur5_A_12 | 1ur5 | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | L - 32 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1ur5_A_12 | 1ur5 | A | BC2NA BINDING SITE FOR CHAIN A | H - 19 |
Clusters included in this Subclass |
CLUSTER: HE.4.318 |
CLUSTER: HE.5.319 |