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Information on SUBCLASS 4.62.1
Subclass Accession number: 8536
Subclass: 4.62.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 25.0 +/- 20.3
Average RMSD (Å) : 0.725 +/- 0.263

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXcLGXXh
(φψ)-conformation: aalaepbb
Pattern: [EFMY][AIVY][AG][GKS]xx[AK]xxx[ALV][AQR]x[EGN][L][G][DPR]x[LV][ILY]
Conservation:-0.660-0.5650.609-0.230-0.734-0.5650.258-0.516-1.323-0.425-0.261-0.341-0.225-0.0881.7593.276-0.462-0.1690.6210.041
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ati_A_4111ati   A415434EYAKRLKARLLALGLGRVLYHHHHHHHHHHHTT-SS-EEEaaaaaaaaaaaaavaepbbx
1ldg_*_301ldg   -3049MIGGVMATLIVQKNLGDVVLHHHHHHHHHHHHTT--EEEEaaaaaaaaaaaaalaexbbx
1qs0_A_2791qs0   A283302YAASRWAAERARRGLGPSLIHHHHHHHHHHHHTTS--EEEaaaaaaaaaaaaavaewbbb
1ur5_A_121ur5   A1231FVGSTTAHWLAAKELGDIVLHHHHHHHHHHHHTT-SEEEEaaaaaaaaaaaaalaexbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ldg_*_301ldg   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE M - 30
1ldg_*_301ldg   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 31
1ldg_*_301ldg   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 32
1qs0_A_2791qs0   A     MSESELENOMETHIONINE F - 279
1ur5_A_121ur5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 12
1ur5_A_121ur5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 13
1ur5_A_121ur5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 14
1ur5_A_121ur5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 32
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ur5_A_121ur5   A BC2NA BINDING SITE FOR CHAIN AH - 19

Clusters included in this Subclass
CLUSTER: HE.4.318
CLUSTER: HE.5.319