Information on SUBCLASS 5.1.2 |
Subclass Accession number: 8549
Subclass: 5.1.2 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 9 Average sequence ID (%) : 27.1 +/- 24.8 Average RMSD (Å) : 0.833 +/- 0.132 Consensus geometry
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Consensus Sequence: | XphphGDXh |
(φψ)-conformation: | aapbpgpbb |
Pattern: | [GKMV] | [cs] | [ens] | [nqstwy] | [FLWY] | [hil] | [cdent] | [DHNQR] | [AILMTV] | [EKNQS] | [aipv] | [DG] | [ADS] | x | [IMV] | [EKPS] | [CFILV] |
Conservation: | -0.769 | 0.310 | -0.317 | -1.303 | 0.650 | -0.703 | -1.054 | 0.078 | -0.335 | 0.244 | -0.978 | 2.464 | 1.031 | -0.908 | 1.538 | 0.151 | -0.098 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1cqx_A_235 | 1cqx | A | 236 | 252 | VSNLLHDHVNVGDQVKL | HHHHHHHH--TT-EEEE | aaaaaaaabbpgxbbbb |
1f20_A_1210 | 1f20 | A | 1210 | 1226 | VCSSWLNRIQADDVVPC | HHHHHHTT--TT-EEEE | aaaaaaaapbpvpxbxb |
1fnb_*_131 | 1fnb | - | 131 | 147 | VCSNFLCDLKPGAEVKL | HHHHHHHH--TT-EEEE | aaaaaaaapbpgxxbxb |
1gvh_A_228 | 1gvh | A | 229 | 245 | VSNWLHNHANVGDVVKL | HHHHHHHT--TT-EEEE | aaaaaaaaxbpgxbbbb |
1i7p_A_125 | 1i7p | A | 125 | 141 | KMSQYLENMNIGDTIEF | HHHHHHHT--TT-EEEE | aaaaaaaaxbpgxbbxb |
1krh_A_180 | 1krh | A | 181 | 197 | MSEYLSVQAKAGDKMSF | HHHHHHTT--TT-EEEE | aaaaaaaapbpgpxbbb |
1ogi_A_116 | 1ogi | A | 116 | 132 | VCSTYLTHIEPGSEVKI | HHHHHHHT--TT-EEEE | aaaaaaaaxxpgxxbxb |
1qfz_A_125 | 1qfz | A | 125 | 141 | VCSNFLCDLKPGSEVKI | HHHHHHHH--TT-EEEE | aaaaaaaapxpgxxbxb |
2pia_*_82 | 2pia | - | 82 | 98 | GSISFIDDTSEGDAVEV | HHHHHHHS--TT-EEEE | aaaaaaaabbpgpxbxb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gvh_A_228 | 1gvh | A | AC1FAD BINDING SITE FOR CHAIN A | Q - 228 |
1gvh_A_228 | 1gvh | A | AC1FAD BINDING SITE FOR CHAIN A | S - 230 |
1ogi_A_116 | 1ogi | A | AC1FAD BINDING SITE FOR CHAIN A | C - 117 |
1ogi_A_116 | 1ogi | A | AC1FAD BINDING SITE FOR CHAIN A | S - 118 |
Clusters included in this Subclass |
CLUSTER: HE.5.93 |
CLUSTER: HE.6.35 |