Information on SUBCLASS 5.4.1 |
Subclass Accession number: 8562
Subclass: 5.4.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 20 Average sequence ID (%) : 14.1 +/- 14.8 Average RMSD (Å) : 0.930 +/- 0.329 Consensus geometry
|
Consensus Sequence: | XXcXXhpXh |
(φψ)-conformation: | aalbppabb |
Pattern: | [aiklmtv] | [cfiltvwy] | [adekqr] | x | x | [DEGKNS] | x | x | [filpvy] | [dehkqw] | x | [fgilvw] | x | x |
Conservation: | -0.205 | 0.118 | 0.385 | -0.652 | -0.543 | 2.922 | 0.319 | -0.298 | -0.137 | 0.538 | -0.800 | -0.675 | -0.972 | -1.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1b7y_B_18 | 1b7y | B | 24 | 37 | RLAGLGFETDRIER | HHHHHT----EEEE | aaaaagbxxabbbx |
1c7s_A_507 | 1c7s | A | 523 | 536 | MHKEAGQPIKTWHF | HHHHTT---S-EEE | aaaaavbppabbba |
1dj3_A_410 | 1dj3 | A | 419 | 431 | IEELAGVPVHYIG. | HHHHHSS---EEE. | aaaaagbxbabbx. |
1eg7_A_1317 | 1eg7 | A | 1317 | 1330 | KCRYAGFKPDATVI | HHHHHT----EEEE | aaaaavxbpabbbb |
1fob_A_103 | 1fob | A | 120 | 133 | TFAENDIDIEIISI | HHHHTT---SEEEE | aaaaalbxbabbxx |
1hw6_A_143 | 1hw6 | A | 149 | 162 | IVAATGVVPAVNQI | HHHHHS---SEEEE | aaaaavbxxabbxb |
1ig3_A_120 | 1ig3 | A | 131 | 144 | KIEEKELQVDVIVT | HHHHTT---SEEEE | aaaaalxbbabbxb |
1ihu_A_501 | 1ihu | A | 513 | 526 | DLERAGIHPWGWII | HHHHTT----EEEE | aaaaavbbpabbbx |
1kkh_A_79 | 1kkh | A | 88 | 101 | TLDYLNIEPKTGFK | HHHHTT----S-EE | aaaaalbbwabxbb |
1l5x_A_70 | 1l5x | A | 77 | 90 | ATFGLGRKYDIVLS | HHHHHTS--SEEEE | aaaaavbxxabbbb |
1lh0_A_1043 | 1lh0 | A | 1056 | 1068 | ALVDSGIEFDLLF. | HHHHH----SEEE. | aaaaavxxbabbb. |
1mhm_A_96 | 1mhm | A | 102 | 115 | LAETLSLKVQDVRY | HHHHTT----EEEE | aaaaavbbxabbbb |
1mzr_A_143 | 1mzr | A | 149 | 162 | LIDETGVTPVINQI | HHHHHS---SEEEE | aaaaavbxxabbxb |
1ogs_A_204 | 1ogs | A | 219 | 231 | AYAEHKLQFWAVT. | HHHHTT---SEEE. | aaaaavbbbabbb. |
1pie_A_101 | 1pie | A | 110 | 123 | MLKGAGYEIDKGFE | HHHHTT----S-EE | aaaaavxbxabxbb |
1qhf_A_29 | 1qhf | A | 41 | 54 | LLKEKKVYPDVLYT | HHHHTT---SEEEE | aaaaalbbxabbbb |
1qj5_A_112 | 1qj5 | A | 126 | 139 | YWQAKGEARQRFLT | HHHHTT----EEEE | aaaaavbxbaxbbb |
1qop_B_207 | 1qop | B | 216 | 229 | ILDKEGRLPDAVIA | HHHHHSS--SEEEE | aaaaavbxxabbbb |
1vgv_A_44 | 1vgv | A | 46 | 57 | VLKLFSIVPDYD.. | HHHHHT---SEE.. | aaaaalxbpabb.. |
1zin_*_90 | 1zin | - | 99 | 112 | MLADIGRKLDYVIH | HHHHTT----EEEE | aaaaavbbxabbxx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1ogs_A_204 | 1ogs | A | AC9SO4 BINDING SITE FOR CHAIN A | W - 228 |
1qop_B_207 | 1qop | B | PLPPLP BINDING SITE FOR CHAIN B | C - 230 |
Clusters included in this Subclass |
CLUSTER: HE.5.42 |
CLUSTER: HE.6.20 |
CLUSTER: HE.7.117 |
CLUSTER: HE.7.35 |