Information on SUBCLASS 5.5.2 |
Subclass Accession number: 8566
Subclass: 5.5.2 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 16.5 +/- 15.9 Average RMSD (Å) : 0.500 +/- 0.100 Consensus geometry
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Consensus Sequence: | XppPXVpXh |
(φψ)-conformation: | aapaapabb |
Pattern: | x | [EKPQ] | x | [ags] | x | x | [LM] | x | x | [DHS] | [PS] | x | [LV] | [adks] | [kmr] | [FLV] | x |
Conservation: | -0.733 | 0.368 | -0.669 | -0.453 | -0.572 | -0.892 | 1.769 | -0.926 | -0.251 | 0.558 | 2.305 | -0.736 | 1.447 | -0.572 | -0.386 | 0.476 | -0.733 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a4i_A_78 | 1a4i | A | 82 | 98 | MKYITSLNEDSTVHGFL | HHHHHHHHH-TT--EEE | aaaaaaaaaxaaxabbb |
1a4s_A_222 | 1a4s | A | 222 | 238 | AETGSLLCHHPNVAKVS | HHHHHHHHH-TT--EEE | aaaaaaaaaxaaxabbb |
1g5t_A_98 | 1g5t | A | 109 | 125 | WQHGKRMLADPLLDMVV | HHHHHHHTT-TT-SEEE | aaaaaaaaaxaaxabbb |
1ibj_A_328 | 1ibj | A | 340 | 356 | RKIAMYLSSHPRVKKVY | HHHHHHHHT-TT--EEE | aaaaaaaaabaababbb |
1mld_A_13 | 1mld | A | 14 | 30 | QPLSLLLKNSPLVSRLT | HHHHHHHHT-TT-SEEE | aaaaaaaaaxaababbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1g5t_A_98 | 1g5t | A | MGMAGNESIUM ION | D - 127 |
1g5t_A_98 | 1g5t | A | ATPADENOSINE-5'-TRIPHOSPHATE | D - 127 |
Clusters included in this Subclass |
CLUSTER: HE.5.199 |
CLUSTER: HE.6.165 |