Information on SUBCLASS 5.5.4 |
Subclass Accession number: 8568
Subclass: 5.5.4 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 14.0 +/- 15.7 Average RMSD (Å) : 0.650 +/- 0.100 Consensus geometry
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Consensus Sequence: | XXpXXhcch |
(φψ)-conformation: | aapaapabb |
Pattern: | [GLW] | [AES] | x | [AKT] | [AILV] | x | x | [AKL] | [AKNT] | x | [DE] | [DKP] | x | [MV] | [KNR] | [DGNT] | [ILV] | [IMV] | [ILV] |
Conservation: | -0.953 | 0.170 | -1.098 | -0.219 | 0.030 | -1.355 | -0.563 | -0.650 | -0.585 | -1.150 | 2.336 | 0.258 | -0.893 | 1.154 | 0.693 | -0.329 | 1.123 | 0.997 | 1.034 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1edz_A_79 | 1edz | A | 79 | 97 | LEEAIIQANGDDSVNGIMV | HHHHHHHHHH-TT--EEEE | aaaaaaaaaaxaaxabbbb |
1hye_A_11 | 1hye | A | 13 | 31 | GSATALLLAKEPFMKDLVL | HHHHHHHHHT-TT--EEEE | aaaaaaaaaaxaaxabbbb |
1hzd_A_107 | 1hzd | A | 111 | 129 | LSKAVDALKSDKKVRTIII | HHHHHHHHHH-SS-SEEEE | aaaaaaaaaapaapabbbb |
1nhp_*_133 | 1nhp | - | 136 | 154 | WAIKLKQKTVDPEVNNVVV | HHHHHHHHHT-TT--EEEE | aaaaaaaaaaxaaxabbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1hye_A_11 | 1hye | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | R - 11 |
1hye_A_11 | 1hye | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | V - 12 |
1hye_A_11 | 1hye | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | G - 13 |
1hye_A_11 | 1hye | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | I - 32 |
1hye_A_11 | 1hye | A | NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | G - 33 |
1nhp_*_133 | 1nhp | * | FADFLAVIN-ADENINE DINUCLEOTIDE | G - 133 |
Clusters included in this Subclass |
CLUSTER: HE.5.283 |
CLUSTER: HE.6.230 |