ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.6.3

Subclass Accession number: 8571
Subclass: 5.6.3

PSSM

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 3

Average sequence ID (%) : 6.3 +/- 9.7
Average RMSD (Å) : 0.800 +/- 0.100

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	pXchXcphX
(φψ)-conformation:	aalaaaabb

Pattern:	x	[AET]	[ERT]	[AQ]	[AIL]	[FIL]	[AIK]	[HKS]	[AE]	[ILV]	x	[DKR]	x	[DGN]	[LY]	[EFM]	[DKN]	[QR]	[FIV]	x	[IKV]
Conservation:	-0.656	-0.656	-0.494	0.478	-0.333	0.639	-1.789	-0.171	0.886	1.610	-0.818	-0.009	-0.494	0.639	0.781	-1.304	0.477	2.376	0.639	-0.980	-0.818

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1d1q_A_19	1d1q	A	22	42	MAEAIFKHEVEKANLENRFNK	HHHHHHHHHHHHTT-GGGEEE	aaaaaaaaaaaaalaaaabab
1d8w_A_311	1d8w	A	311	331	DETQAIASEIVRHDLFDRVHI	HHHHHHHHHHHHTTGGGTEEE	aaaaaaaaaaaaalaaaabbx
1hzy_A_277	1hzy	A	278	298	QTRALLIKALIDQGYMKQILV	HHHHHHHHHHHHTT-GGGEEE	aaaaaaaaaaaaavaaaabbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1d1q_A_19	1d1q	A	4NP4-NITROPHENYL PHOSPHATE	R - 19
1d1q_A_19	1d1q	A	4NP4-NITROPHENYL PHOSPHATE	S - 20
1d1q_A_19	1d1q	A	4NP4-NITROPHENYL PHOSPHATE	P - 21
1d1q_A_19	1d1q	A	4NP4-NITROPHENYL PHOSPHATE	F - 46
1d8w_A_311	1d8w	A	MSESELENOMETHIONINE	T - 313
1d8w_A_311	1d8w	A	MSESELENOMETHIONINE	Q - 314
1d8w_A_311	1d8w	A	MSESELENOMETHIONINE	I - 316
1d8w_A_311	1d8w	A	MSESELENOMETHIONINE	A - 317
1d8w_A_311	1d8w	A	MSESELENOMETHIONINE	I - 320
1d8w_A_311	1d8w	A	MSESELENOMETHIONINE	H - 323
1d8w_A_311	1d8w	A	MSESELENOMETHIONINE	L - 325
1d8w_A_311	1d8w	A	MSESELENOMETHIONINE	R - 328
1d8w_A_311	1d8w	A	MSESELENOMETHIONINE	I - 331
1d8w_A_311	1d8w	A	MSESELENOMETHIONINE	G - 332
1d8w_A_311	1d8w	A	MSESELENOMETHIONINE	L - 333
1hzy_A_277	1hzy	A	EGLETHYLENE GLYCOL	W - 277
1hzy_A_277	1hzy	A	EGLETHYLENE GLYCOL	Q - 278
1hzy_A_277	1hzy	A	EGLETHYLENE GLYCOL	T - 279
1hzy_A_277	1hzy	A	EGLETHYLENE GLYCOL	L - 282
1hzy_A_277	1hzy	A	PEL2-PHENYL-ETHANOL	M - 293
1hzy_A_277	1hzy	A	PEL2-PHENYL-ETHANOL	K - 294

Clusters included in this Subclass

CLUSTER: HE.5.315