Information on SUBCLASS 5.9.2 |
Subclass Accession number: 8581
Subclass: 5.9.2 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 7 Average sequence ID (%) : 19.4 +/- 17.6 Average RMSD (Å) : 0.800 +/- 0.379 Consensus geometry
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Consensus Sequence: | ppXXXhXVh |
(φψ)-conformation: | aabaappbb |
Pattern: | [FGILV] | x | [EGKQRS] | [dhnrt] | x | [KPT] | [ADEN] | [afl] | [efk] | [GV] | [AILV] | [fgltv] |
Conservation: | -0.249 | -0.467 | -0.038 | -0.676 | -1.001 | 2.290 | 0.188 | -0.928 | 0.097 | 1.256 | 0.608 | -1.079 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1apy_B_259 | 1apy | B | 270 | 281 | IQKHFPEFFGAV | HHHH-TT--EEE | aaaabaaxxbbb |
1h7e_A_104 | 1h7e | A | 113 | 124 | GMRDDPALPVAT | HHHH-TT--EEE | aaaabaaxwbbb |
1iy8_A_47 | 1iy8 | A | 57 | 68 | VLETAPDAEVLT | HHHH-TT--EEE | aaaabaaxxbbb |
1j79_A_161 | 1j79 | A | 164 | 175 | LRQRLTALKVVF | HHHH-TT--EEE | aaaabaaxxbbx |
1ka1_A_47 | 1ka1 | A | 60 | 71 | IKSNFPDDKVVG | HHHH-TT--EEE | aaaabaaxxbxb |
1luc_B_55 | 1luc | B | 62 | 73 | LLGMTKNAKVAS | HHHH-SSSEEEE | aaaabaaxxbbx |
1pjr_*_270 | 1pjr | - | 270 | 281 | FERDYPNAKVIL | HHHHSTT-EEEE | aaaabaapxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1apy_B_259 | 1apy | B | NAGN-ACETYL-D-GLUCOSAMINE | P - 259 |
1apy_B_259 | 1apy | B | NAGN-ACETYL-D-GLUCOSAMINE | N - 285 |
1ka1_A_47 | 1ka1 | A | CACALCIUM ION | D - 49 |
1ka1_A_47 | 1ka1 | A | A3PADENOSINE-3'-5'-DIPHOSPHATE | D - 49 |
Clusters included in this Subclass |
CLUSTER: HE.4.164 |
CLUSTER: HE.5.138 |