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Information on SUBCLASS 1.2.8
Subclass Accession number: 86
Subclass: 1.2.8 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 6.7 +/- 9.0
Average RMSD (Å) : 0.733 +/- 0.058

Consensus geometry
d (Å): 11 delta (°): 0-45 theta (°): 45-90 rho (°): 45-90
Consensus Sequence: XhXXX
(φψ)-conformation: aapbp
Pattern: [DRS][AKS]x[IL][ACF][PQS][AGL][IKL]xx
Conservation:-0.2400.304-1.1902.3300.0320.168-0.918-0.5110.672-0.647
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1f7u_A_511f7u   A5160SSLIFPALEWHHHHGGG-EEaaaaaaaxbx
1nrl_A_1931nrl   A203212RKDLCSLKVSHHHHTTS-EEaaaaaaaxbx
1vdk_A_3621vdk   A384393DAHLAQGIEPHHHTGGG-EEaaaIaaaxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f7u_A_511f7u   A     DHU5,6-DIHYDROURIDINE-5'-PHOSPHATE L - 58
1f7u_A_511f7u   A     DHU5,6-DIHYDROURIDINE-5'-PHOSPHATE E - 59
1f7u_A_511f7u   A     DHU5,6-DIHYDROURIDINE-5'-PHOSPHATE W - 60
1nrl_A_1931nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER L - 206
1nrl_A_1931nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER L - 209
1nrl_A_1931nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER V - 211

Clusters included in this Subclass
CLUSTER: HE.5.123