ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.22.1

Subclass Accession number: 8600
Subclass: 5.22.1

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 6

Average sequence ID (%) : 44.8 +/- 27.2
Average RMSD (Å) : 0.417 +/- 0.160

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	phpGKIXXW
(φψ)-conformation:	aaplababb

Pattern:	[ARST]	[FLT]	x	[ANQS]	[AV]	[FLM]	[IKV]	[DNQ]	[FH]	[AIV]	[ENT]	[GKT]	[LMV]	[AFM]	[ADRT]	[EHR]	[FY]	[EHK]	[G]	[K]	[IV]	x	[aeqs]	[W]	[d]	[TV]	[AFLV]	[N]
Conservation:	-0.632	-0.593	-1.112	-0.566	-0.189	-0.044	-0.639	-0.038	0.644	-0.243	-0.360	-0.632	-0.087	-0.522	-0.871	-0.042	0.956	-0.213	1.486	1.058	0.457	-1.085	-0.729	3.630	-0.393	-0.053	-0.676	1.486

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b31_A_102	1b31	A	104	131	TLISVLKNHITTVMTRYKGKIYAWDVLN	HHHHHHHHHHHHHHHHTTTT-SEEEEEE	aaaaaaaaaaaaaaaaapvababbxabb
1e4i_A_138	1e4i	A	138	165	RTIQAFVQFAETMFREFHGKIQHWLTFN	HHHHHHHHHHHHHHHHTBTTB-EEEEEE	aaaaaaaaaaaaaaaaapvababbbabx
1exp_*_97	1exp	-	99	126	AFESAMVNHVTKVADHFEGKVASWDVVN	HHHHHHHHHHHHHHHHHTTT-SEEEEEE	aaaaaaaaaaaaaaaaapvaxabbxabb
1i1w_A_101	1i1w	A	103	130	TLTNVMKNHITTLMTRYKGKIRAWDVVN	HHHHHHHHHHHHHHHHTTTS-SEEEEEE	aaaaaaaaaaaaaaaaapvababbxabb
1od8_A_98	1od8	A	100	127	ALRQAMIDHINGVMAHYKGKIVQWDVVN	HHHHHHHHHHHHHHHHTTTT-SEEEEEE	aaaaaaaaaaaaaaaaapvababbxabb
1xyz_A_615	1xyz	A	617	644	SLLAVMKNHITTVMTHYKGKIVEWDVAN	HHHHHHHHHHHHHHHHTTTT-SEEEEEE	aaaaaaaaaaaaaaaaapvababbxabb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1e4i_A_138	1e4i	A	NFG2,4-DINITROPHENYL 2-DEOXY-2-FLUORO-BETA-D-ALLOPYRANOSIDE	R - 138
1e4i_A_138	1e4i	A	NFG2,4-DINITROPHENYL 2-DEOXY-2-FLUORO-BETA-D-ALLOPYRANOSIDE	T - 139
1e4i_A_138	1e4i	A	NFG2,4-DINITROPHENYL 2-DEOXY-2-FLUORO-BETA-D-ALLOPYRANOSIDE	I - 140
1e4i_A_138	1e4i	A	NFG2,4-DINITROPHENYL 2-DEOXY-2-FLUORO-BETA-D-ALLOPYRANOSIDE	Q - 141
1e4i_A_138	1e4i	A	NFG2,4-DINITROPHENYL 2-DEOXY-2-FLUORO-BETA-D-ALLOPYRANOSIDE	V - 144
1e4i_A_138	1e4i	A	NFG2,4-DINITROPHENYL 2-DEOXY-2-FLUORO-BETA-D-ALLOPYRANOSIDE	Q - 145
1e4i_A_138	1e4i	A	NFG2,4-DINITROPHENYL 2-DEOXY-2-FLUORO-BETA-D-ALLOPYRANOSIDE	E - 148
1e4i_A_138	1e4i	A	G2F2-DEOXY-2FLUORO-GLUCOSE	N - 165
1exp_*_97	1exp	*	G2F2-DEOXY-2FLUORO-GLUCOSE	D - 123
1exp_*_97	1exp	*	G2F2-DEOXY-2FLUORO-GLUCOSE	N - 126
1i1w_A_101	1i1w	A	UNXUNKNOWN ATOM OR ION	K - 101
1i1w_A_101	1i1w	A	UNXUNKNOWN ATOM OR ION	K - 109
1i1w_A_101	1i1w	A	GOLGLYCEROL	N - 110
1i1w_A_101	1i1w	A	UNXUNKNOWN ATOM OR ION	T - 113
1i1w_A_101	1i1w	A	GOLGLYCEROL	T - 113
1i1w_A_101	1i1w	A	GOLGLYCEROL	T - 114
1i1w_A_101	1i1w	A	GOLGLYCEROL	T - 117
1i1w_A_101	1i1w	A	GOLGLYCEROL	R - 118
1i1w_A_101	1i1w	A	ACNACETONE	R - 118
1i1w_A_101	1i1w	A	GOLGLYCEROL	Y - 119
1i1w_A_101	1i1w	A	GOLGLYCEROL	K - 122
1i1w_A_101	1i1w	A	GOLGLYCEROL	N - 130
1od8_A_98	1od8	A	XDLXYLOSE-DERIVED ISOFAGOMINE LACTAM	N - 127

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1od8_A_98	1od8	A	AC9XDL BINDING SITE FOR CHAIN A	N - 127

Clusters included in this Subclass