Information on SUBCLASS 5.42.1 |
Subclass Accession number: 8620
Subclass: 5.42.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 32.1 +/- 22.1 Average RMSD (Å) : 0.533 +/- 0.231 Consensus geometry
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Consensus Sequence: | XXGpXGXhX |
(φψ)-conformation: | aalapgabb |
Pattern: | [AN] | [EKM] | x | [AG] | x | x | [L] | x | x | [DE] | [A] | x | [KV] | [AIK] | [AT] | [G] | [HSY] | x | [G] | [KM] | [ILV] | [EKP] | x | [AG] | x | x |
Conservation: | 0.010 | -0.535 | -0.677 | 0.218 | -1.019 | -0.479 | 1.241 | -0.615 | -0.961 | 1.081 | 1.241 | -0.615 | -0.393 | -1.104 | 0.111 | 2.519 | -0.109 | -1.104 | 2.519 | 0.024 | 0.388 | -0.251 | -0.615 | 0.449 | -0.535 | -0.789 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1one_A_221 | 1one | A | 221 | 246 | AEEALDLIVDAIKAAGHDGKVKIGLD | HHHHHHHHHHHHHHHT-TTT-EEEEE | aaaaaaaaaaaaaaavapvabbbbbb |
1pdz_*_219 | 1pdz | - | 219 | 244 | NKDALDLIQEAIKKAGYTGKIEIGMD | HHHHHHHHHHHHHHHT-BTTBEEEEE | aaaaaaaaaaaaaaavapvabbbbbb |
2ayq_A_242 | 2ayq | A | 242 | 267 | NMFGDILSDEASVITGSLGMLPSASL | HHHHHHHHHHHHHHTT-TTS-EEEEE | aaaaaaaaaaaaaaavapgaxbbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1one_A_221 | 1one | A | MGMAGNESIUM ION | D - 246 |
1one_A_221 | 1one | A | PEPPHOSPHOENOLPYRUVATE | D - 246 |
1one_A_221 | 1one | A | PAG2-PHOSPHO-D-GLYCERIC ACID | D - 246 |
1pdz_*_219 | 1pdz | * | PGA2-PHOSPHOGLYCOLIC ACID | D - 244 |
1pdz_*_219 | 1pdz | * | MNMANGANESE (II) ION | D - 244 |
Clusters included in this Subclass |
CLUSTER: HE.6.153 |