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Information on SUBCLASS 5.47.1
Subclass Accession number: 8625
Subclass: 5.47.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 38.1 +/- 27.0
Average RMSD (Å) : 1.033 +/- 0.404

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XLXhpcXXh
(φψ)-conformation: aalpblppb
Pattern: [PQ][KY][AV][AV][AGI][TV][L]x[AY][IL][KL]x[L][GR][PV][KQ][GN][IK]x[GL][G]
Conservation:0.233-0.121-0.068-0.068-1.1880.0791.345-0.628-0.3320.638-0.628-1.0301.345-0.205-0.3320.6440.822-0.981-1.109-1.1872.770
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e5d_A_3201e5d   A320340PYVAGTLQYIKGLRPQNKIGGHHHHHHHHHHHHT---S-EEEaaaaaaaaaaaaalxblbxxb
1gnl_A_4881gnl   A488508QKAVIVLLALLSLGVKNIHLGHHHHHHHHHHHHTT----EEEaaaaaaaaaaaaavxbvxxbb
1gnt_A_4951gnt   A495515QKAVAVLLALLFLGVKGIRLGHHHHHHHHHHHHTT--S-EEEaaaaaaaaaaaaavxbvxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e5d_A_3201e5d   A     FMNFLAVIN MONONUCLEOTIDE S - 344
1e5d_A_3201e5d   A     FMNFLAVIN MONONUCLEOTIDE F - 345
1gnl_A_4881gnl   A     FS4IRON/SULFUR CLUSTER Q - 488
1gnl_A_4881gnl   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER Q - 488
1gnl_A_4881gnl   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER K - 489
1gnl_A_4881gnl   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER A - 490
1gnl_A_4881gnl   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER V - 491
1gnt_A_4951gnt   A     FS4IRON/SULFUR CLUSTER Q - 495
1gnt_A_4951gnt   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER Q - 495
1gnt_A_4951gnt   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER K - 496
1gnt_A_4951gnt   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER A - 497
1gnt_A_4951gnt   A     FSOIRON/SULFUR/OXYGEN HYBRID CLUSTER V - 498
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e5d_A_3201e5d   A FMAFMN BINDING SITE FOR CHAIN AF - 345
1gnt_A_4951gnt   A FSOFSO BINDING SITE FOR CHAIN AK - 496

Clusters included in this Subclass
CLUSTER: HE.5.254